TissueCFM001355's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.002480253 | cazy family |
| phosphatidate metabolism, as a signaling molecule | 0.004955377 | plantCyc |
| replication fork | 0.005059831 | GO:0005657 |
| Rad51B-Rad51C-Rad51D-XRCC2 complex | 0.005059831 | GO:0033063 |
| meiotic DNA recombinase assembly | 0.009925615 | GO:0000707 |
| mitotic recombination | 0.009925615 | GO:0006312 |
| response to ionizing radiation | 0.009925615 | GO:0010212 |
| strand invasion | 0.009925615 | GO:0042148 |
| reciprocal meiotic recombination | 0.009925615 | GO:0007131 |
| cellular water homeostasis | 0.01127161 | GO:0009992 |
| glycerol transport | 0.01127161 | GO:0015793 |
| water transport | 0.01127161 | GO:0006833 |
| ion transmembrane transport | 0.017015046 | GO:0034220 |
| recombinase activity | 0.017661663 | GO:0000150 |
| endodeoxyribonuclease activity | 0.017661663 | GO:0004520 |
| four-way junction DNA binding | 0.017661663 | GO:0000400 |
| glycerol channel activity | 0.01848493 | GO:0015254 |
| single-stranded DNA binding | 0.01848493 | GO:0003697 |
| DNA-dependent ATPase activity | 0.01848493 | GO:0008094 |
| water channel activity | 0.01848493 | GO:0015250 |
| double-stranded DNA binding | 0.02204285 | GO:0003690 |
| coenzyme binding | 0.025454806 | GO:0050662 |
| Homologous recombination | 0.033889476 | KEGG pathway |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008045 | AT4G35100 (1.00E-141) | PIP2; 7|PLASMA MEMBRANE INTRINSIC PROTEIN 2; 7; PIP3|plasma membrane intrinsic protein 3; PIP3A|PLASMA MEMBRANE INTRINSIC PROTEIN 3A |
| CRO_T014140 | AT1G54380 (5.00E-50) | spliceosome protein-related |
| CRO_T015927 | AT1G19690 (2.00E-91) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T018346 | - | - |
| CRO_T026638 | AT5G20850 (6.00E-18) | ATRAD51; RAD51|RAS associated with diabetes protein 51 |
| CRO_T026726 | AT1G09020 (3.00E-67) | SNF4|homolog of yeast sucrose nonfermenting 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000648 | ascorbate glutathione cycle L-ascorbate degradation V Ascorbate and aldarate metabolism Pyruvate metabolism phosphatidate metabolism, as a signaling molecule seed maturation seed germination chloroplast organization chloroplast stroma | details |
| TissueCFM000689 | lipid IVA biosynthesis Lipopolysaccharide biosynthesis lipid X metabolic process acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity glycerol transport water transport cellular water homeostasis Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: HB glycerol channel activity water channel activity ion transmembrane transport lipid binding | details |
| TissueCFM000750 | clathrin-mediated endocytosis clathrin heavy chain binding Transcription_related, Transcription factor: BBR-BPC leucopelargonidin and leucocyanidin biosynthesis phosphatidate metabolism, as a signaling molecule structural molecule activity clathrin vesicle coat Transcription_related, Transcription factor: GRAS | details |
| TissueCFM001037 | mitochondrion hydrogen ion transmembrane transporter activity ATP synthesis coupled proton transport quinone binding NAD binding Oxidative phosphorylation NADH dehydrogenase activity phosphatidate metabolism, as a signaling molecule respiratory chain NADH dehydrogenase (ubiquinone) activity oxidation-reduction process | details |
| TissueCFM001038 | quinone binding NAD binding Oxidative phosphorylation phosphatidate metabolism, as a signaling molecule NADH dehydrogenase activity mitochondrion respiratory chain oxidation-reduction process protein ubiquitination NADH dehydrogenase (ubiquinone) activity ligase activity | details |
| TissueCFM001046 | mannose-1-phosphate guanylyltransferase (GDP) activity Transcription_related, Transcription regulator: SWI/SNF-BAF60b GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism Inositol phosphate metabolism phospholipases water channel activity glycerol channel activity Transcription_related, Transcription factor: MYB cellular water homeostasis water transport glycerol transport hydrolase activity, acting on ester bonds translation initiation factor activity biosynthetic process translational initiation ion transmembrane transport | details |
| TissueCFM001354 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription regulator: SWI/SNF-BAF60b replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex strand invasion regulation of cyclin-dependent protein serine/threonine kinase activity mitotic recombination regulation of mitotic cell cycle reciprocal meiotic recombination response to ionizing radiation meiotic DNA recombinase assembly Homologous recombination cellular water homeostasis water transport glycerol transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding water channel activity DNA-dependent ATPase activity glycerol channel activity single-stranded DNA binding double-stranded DNA binding ion transmembrane transport translational initiation translation initiation factor activity | details |
| TissueCFM001616 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism mannose-1-phosphate guanylyltransferase (GDP) activity water channel activity glycerol channel activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase water transport glycerol transport cellular water homeostasis ion transmembrane transport Ubiquitin_Proteasome_system, E3: U-box biosynthetic process intracellular signal transduction | details |
| TissueCFM001657 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: HB water transport glycerol transport cellular water homeostasis glycerol channel activity water channel activity ion transmembrane transport lipid binding | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |