TissueCFM000291's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: UBR-box | 0.001329237 | ubs family |
| RNA splicing, via transesterification reactions | 0.015633677 | GO:0000375 |
| protein N-linked glycosylation via asparagine | 0.019528241 | GO:0018279 |
| second spliceosomal transesterification activity | 0.019539786 | GO:0000386 |
| aerobic respiration I (cytochrome c) | 0.021346423 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.021346423 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.021346423 | plantCyc |
| mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 0.023684728 | GO:0000275 |
| Ino80 complex | 0.023684728 | GO:0031011 |
| ADP binding | 0.031223035 | GO:0043531 |
| proton-transporting ATP synthase activity, rotational mechanism | 0.032134137 | GO:0046933 |
| proton-transporting ATPase activity, rotational mechanism | 0.032134137 | GO:0046961 |
| plant-type cell wall organization | 0.034231901 | GO:0009664 |
| unidimensional cell growth | 0.034231901 | GO:0009826 |
| ATP synthesis coupled proton transport | 0.034231901 | GO:0015986 |
| spliceosomal complex | 0.04729114 | GO:0005681 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001972 | AT5G47030 (4.00E-72) | ATPase, F1 complex, delta/epsilon subunit |
| CRO_T002971 | AT3G14470 (1.00E-102) | NB-ARC domain-containing disease resistance protein |
| CRO_T012169 | AT4G23860 (3.00E-108) | PHD finger protein-related |
| CRO_T015246 | AT3G14470 (1.00E-179) | NB-ARC domain-containing disease resistance protein |
| CRO_T019728 | AT3G45830 (0) | unknown protein |
| CRO_T022078 | AT5G11530 (1.00E-05) | EMF1|embryonic flower 1 |
| CRO_T027907 | AT3G45950 (3.00E-108) | Pre-mRNA splicing Prp18-interacting factor |
| CRO_T031390 | AT5G66680 (0) | DGL1|DEFECTIVE GLYCOSYLATION |
| CRO_T031912 | AT1G47260 (8.00E-87) | GAMMA CA2|gamma carbonic anhydrase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000007 | details | |
| TissueCFM000166 | glyoxylate metabolic process mitochondrial transport mitochondrial membrane seed germination serine-type carboxypeptidase activity response to cytokinin proteolysis involved in cellular protein catabolic process anchored component of plasma membrane Peroxisome | details |
| TissueCFM000377 | Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII kinase activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX | details |
| TissueCFM000694 | pentose phosphate pathway (oxidative branch) I ER to Golgi transport vesicle glucose-6-phosphate dehydrogenase activity second spliceosomal transesterification activity glucan catabolic process RNA splicing, via transesterification reactions Rho guanyl-nucleotide exchange factor activity scopolin beta-glucosidase activity pentose-phosphate shunt glucose metabolic process hydrolase activity | details |
| TissueCFM001421 | Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucan catabolic process RNA splicing, via transesterification reactions scopolin beta-glucosidase activity Rho guanyl-nucleotide exchange factor activity second spliceosomal transesterification activity DNA metabolic process positive regulation of GTPase activity beta-glucosidase activity spliceosomal complex DNA replication | details |
| TissueCFM001440 | Ubiquitin_Proteasome_system, E3: UBR-box Transcription_related, Transcription factor: NF-YC protein neddylation proteasome assembly protein N-linked glycosylation via asparagine positive regulation of ubiquitin-protein transferase activity ubiquitin-like protein binding cullin family protein binding N-Glycan biosynthesis Proteasome structural molecule activity ubiquitin conjugating enzyme binding proteasome regulatory particle, lid subcomplex unidimensional cell growth plant-type cell wall organization ubiquitin-dependent protein catabolic process protein heterodimerization activity transferase activity, transferring glycosyl groups ubiquitin ligase complex | details |
| TissueCFM001738 | Ubiquitin_Proteasome_system, E3: UBR-box Spliceosome macromolecule modification regulation of RNA splicing regulation of cell differentiation regulation of signal transduction aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mRNA processing RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |