TissueCFM000734's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Folate biosynthesis | 0.003305685 | KEGG pathway |
| Transcription_related, Transcription factor: OFP | 0.003305685 | TF family |
| dihydroneopterin aldolase activity | 0.003447698 | GO:0004150 |
| folic acid biosynthetic process | 0.004723347 | GO:0046656 |
| tetrahydrofolate biosynthetic process | 0.005902613 | GO:0046654 |
| oxidoreductase activity, acting on the CH-CH group of donors | 0.006891729 | GO:0016627 |
| nucleoside metabolic process | 0.007866663 | GO:0009116 |
| 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I | 0.008616954 | plantCyc |
| tetrahydrofolate biosynthesis II | 0.018928747 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.028282608 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.028282608 | plantCyc |
| lipid metabolic process | 0.045160995 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000942 | AT2G38050 (1.00E-15) | DET2|DE-ETIOLATED 2; DWF6|DWARF 6 |
| CRO_T007156 | AT3G28700 (1.00E-117) | Protein of unknown function (DUF185) |
| CRO_T007327 | AT1G69030 (3.00E-59) | BSD domain-containing protein |
| CRO_T009555 | AT1G64385 (2.00E-32) | unknown protein |
| CRO_T014059 | AT3G52525 (3.00E-22) | ATOFP6|OVATE FAMILY PROTEIN 6 |
| CRO_T023336 | AT4G24340 (5.00E-102) | Phosphorylase superfamily protein |
| CRO_T023935 | AT3G11750 (3.00E-41) | FOLB1|Dihydroneopterin aldolase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000256 | nucleocytoplasmic transporter activity Transcription_related, Transcription factor: OFP nuclear pore RNA transport | details |
| TissueCFM000660 | L-malate dehydrogenase activity glyoxylate cycle TCA cycle II (plants and fungi) tetrapyrrole biosynthesis I (from glutamate) gluconeogenesis I tricarboxylic acid cycle malate metabolic process Porphyrin and chlorophyll metabolism | details |
| TissueCFM000895 | L-serine biosynthesis photorespiration oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor NAD binding | details |
| TissueCFM001219 | methyltransferase activity sulfurtransferase activity tRNA wobble position uridine thiolation wobble position cytosine ribose methylation wobble position uridine ribose methylation alditol:NADP+ 1-oxidoreductase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions thylakoid lumen extrinsic component of membrane photosystem II oxygen evolving complex Protein processing in endoplasmic reticulum Photosynthesis | details |
| TissueCFM001395 | Transcription_related, Transcription factor: C3H Fanconi anemia pathway very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II oxidoreductase activity, acting on the CH-CH group of donors DNA metabolic process lipid metabolic process | details |
| TissueCFM001719 | glyoxylate cycle TCA cycle II (plants and fungi) L-malate dehydrogenase activity protein processing malate metabolic process tricarboxylic acid cycle gluconeogenesis I | details |
| TissueCFM001819 | Transcription_related, Transcription factor: MYB calcium-transporting ATPase activity calcium ion transmembrane transport protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |