TissueCFM000895's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-serine biosynthesis | 0.004342174 | plantCyc |
| photorespiration | 0.006505182 | plantCyc |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 0.02838557 | GO:0016616 |
| NAD binding | 0.037333042 | GO:0051287 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000856 | AT4G17540 (1.00E-18) | unknown protein |
| CRO_T007327 | AT1G69030 (3.00E-59) | BSD domain-containing protein |
| CRO_T011084 | AT1G74240 (1.00E-11) | Mitochondrial substrate carrier family protein |
| CRO_T016778 | AT2G38610 (1.00E-130) | RNA-binding KH domain-containing protein |
| CRO_T017935 | - | - |
| CRO_T021350 | AT1G17745 (1.00E-21) | PGDH|3-phosphoglycerate dehydrogenase; PGDH2|phosphoglycerate dehydrogenase 2 |
| CRO_T026370 | AT4G36440 (2.00E-135) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000660 | L-malate dehydrogenase activity glyoxylate cycle TCA cycle II (plants and fungi) tetrapyrrole biosynthesis I (from glutamate) gluconeogenesis I tricarboxylic acid cycle malate metabolic process Porphyrin and chlorophyll metabolism | details |
| TissueCFM000734 | Folate biosynthesis Transcription_related, Transcription factor: OFP dihydroneopterin aldolase activity folic acid biosynthetic process tetrahydrofolate biosynthetic process oxidoreductase activity, acting on the CH-CH group of donors nucleoside metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II lipid metabolic process | details |
| TissueCFM001219 | methyltransferase activity sulfurtransferase activity tRNA wobble position uridine thiolation wobble position cytosine ribose methylation wobble position uridine ribose methylation alditol:NADP+ 1-oxidoreductase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions thylakoid lumen extrinsic component of membrane photosystem II oxygen evolving complex Protein processing in endoplasmic reticulum Photosynthesis | details |
| TissueCFM001366 | phytol salvage pathway phytol kinase activity tRNA methyltransferase activity rRNA methyltransferase activity vitamin E biosynthetic process rRNA base methylation tRNA methylation iron-sulfur cluster binding | details |
| TissueCFM001478 | rRNA (adenine-N6,N6-)-dimethyltransferase activity L-serine biosynthesis damaged DNA binding oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor nucleotide-excision repair rRNA methylation photorespiration response to cold NAD binding very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process response to stress Fatty acid metabolism | details |
| TissueCFM001719 | glyoxylate cycle TCA cycle II (plants and fungi) L-malate dehydrogenase activity protein processing malate metabolic process tricarboxylic acid cycle gluconeogenesis I | details |
Expression profiles
 Show details about module gene expression profiling |