TissueCFM000735's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosolic large ribosomal subunit | 3.51E-09 | GO:0022625 |
| Ribosome | 2.38E-07 | KEGG pathway |
| structural constituent of ribosome | 4.33E-06 | GO:0003735 |
| cytoplasmic translation | 0.000192699 | GO:0002181 |
| positive regulation of protein kinase activity | 0.003218323 | GO:0045860 |
| translation | 0.007458501 | GO:0006412 |
| protein kinase activator activity | 0.007789809 | GO:0030295 |
| preribosome, large subunit precursor | 0.012169917 | GO:0030687 |
| ribosomal large subunit assembly | 0.017126384 | GO:0000027 |
| translational elongation | 0.017126384 | GO:0006414 |
| response to heat | 0.017126384 | GO:0009408 |
| large ribosomal subunit rRNA binding | 0.019030503 | GO:0070180 |
| heat shock protein binding | 0.019457263 | GO:0031072 |
| protein folding | 0.049266822 | GO:0006457 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005565 | AT1G36240 (2.00E-27) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T016939 | AT2G37600 (3.00E-43) | Ribosomal protein L36e family protein |
| CRO_T021143 | AT2G39460 (2.00E-30) | ATRPL23A|RIBOSOMAL PROTEIN L23A; RPL23A1|RIBOSOMAL PROTEIN L23A1; RPL23AA|ribosomal protein L23AA |
| CRO_T022826 | AT4G22753 (1.00E-24) | SMO1-3|sterol 4-alpha methyl oxidase 1-3 |
| CRO_T031223 | AT1G01100 (3.00E-18) | 60S acidic ribosomal protein family |
| CRO_T031777 | AT2G20560 (1.00E-17) | DNAJ heat shock family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000642 | Transcription_related, Transcription regulator: SWI/SNF-BAF60b karyogamy Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi transport complex transcription coactivator activity retrograde vesicle-mediated transport, Golgi to ER Golgi organization aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation | details |
| TissueCFM000716 | glutathione dehydrogenase (ascorbate) activity glucose-6-phosphate isomerase activity Rap1 signaling pathway Calcium signaling pathway ascorbate glutathione cycle GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) cytoskeleton Ascorbate and aldarate metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) actin binding glutathione transferase activity gluconeogenesis | details |
| TissueCFM000872 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleocytoplasmic transport cellular response to nitrogen levels response to sucrose fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis II Apelin signaling pathway Glutathione metabolism toxin catabolic process glutathione metabolic process small GTPase mediated signal transduction RNA transport | details |
| TissueCFM001007 | cofactor binding Rab GDP-dissociation inhibitor activity arginine transmembrane transporter activity succinate-CoA ligase (ADP-forming) activity succinate-CoA ligase (GDP-forming) activity L-ornithine transmembrane transporter activity L-histidine transmembrane transporter activity L-lysine transmembrane transporter activity L-ornithine transmembrane transport nucleoside triphosphate biosynthetic process succinyl-CoA metabolic process snRNA transcription succinate metabolic process arginine transmembrane transport L-histidine transmembrane transport L-arginine import pyruvate dehydrogenase (acetyl-transferring) activity ornithine-citrulline shuttle pyruvate decarboxylation to acetyl CoA L-lysine transmembrane transport TCA cycle II (plants and fungi) proline biosynthetic process Carbon metabolism acetyl-CoA biosynthetic process from pyruvate response to endoplasmic reticulum stress protein disulfide isomerase activity signal peptide processing endoplasmic reticulum Protein export tricarboxylic acid cycle | details |
| TissueCFM001009 | proteasome core complex assembly proteasome binding glucose-6-phosphate isomerase activity Transcription_related, Transcription factor: HB GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis protein tyrosine phosphatase activity heat shock protein binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) peptidyl-tyrosine dephosphorylation response to heat glycolytic process | details |
| TissueCFM001050 | Transcription_related, Transcription factor: B3 aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) ascorbate glutathione cycle NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I cytoplasmic microtubule organization triacylglycerol degradation | details |
| TissueCFM001121 | snRNA transcription Rab GDP-dissociation inhibitor activity maturation of LSU-rRNA regulation of catalytic activity translational elongation nucleotidyltransferase activity translation elongation factor activity protein transport small GTPase mediated signal transduction | details |
| TissueCFM001145 | adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b Golgi transport complex proton-transporting ATP synthase complex, catalytic core F(1) Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization triglyceride lipase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization ATP synthesis coupled proton transport peptidyl-prolyl cis-trans isomerase activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism cytosolic large ribosomal subunit ubiquitin-dependent protein catabolic process | details |
| TissueCFM001259 | glucose-6-phosphate isomerase activity protein tyrosine phosphatase activity peptidyl-tyrosine dephosphorylation gluconeogenesis glycolytic process GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis I glycolysis I (from glucose 6-phosphate) ligase activity Aminoacyl-tRNA biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |