TissueCFM001007's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cofactor binding | 0.006916173 | GO:0048037 |
| Rab GDP-dissociation inhibitor activity | 0.006916173 | GO:0005093 |
| arginine transmembrane transporter activity | 0.006916173 | GO:0015181 |
| succinate-CoA ligase (ADP-forming) activity | 0.006916173 | GO:0004775 |
| succinate-CoA ligase (GDP-forming) activity | 0.006916173 | GO:0004776 |
| L-ornithine transmembrane transporter activity | 0.006916173 | GO:0000064 |
| L-histidine transmembrane transporter activity | 0.006916173 | GO:0005290 |
| L-lysine transmembrane transporter activity | 0.00756367 | GO:0015189 |
| L-ornithine transmembrane transport | 0.008143405 | GO:1903352 |
| nucleoside triphosphate biosynthetic process | 0.008143405 | GO:0009142 |
| succinyl-CoA metabolic process | 0.008143405 | GO:0006104 |
| snRNA transcription | 0.008143405 | GO:0009301 |
| succinate metabolic process | 0.008143405 | GO:0006105 |
| arginine transmembrane transport | 0.008724045 | GO:1903826 |
| L-histidine transmembrane transport | 0.008724045 | GO:0089709 |
| L-arginine import | 0.01017685 | GO:0043091 |
| pyruvate dehydrogenase (acetyl-transferring) activity | 0.010753406 | GO:0004739 |
| ornithine-citrulline shuttle | 0.010953252 | plantCyc |
| pyruvate decarboxylation to acetyl CoA | 0.010953252 | plantCyc |
| L-lysine transmembrane transport | 0.011306274 | GO:1903401 |
| TCA cycle II (plants and fungi) | 0.011671049 | plantCyc |
| proline biosynthetic process | 0.012209333 | GO:0006561 |
| Carbon metabolism | 0.012280691 | KEGG pathway |
| acetyl-CoA biosynthetic process from pyruvate | 0.012947762 | GO:0006086 |
| response to endoplasmic reticulum stress | 0.018642126 | GO:0034976 |
| protein disulfide isomerase activity | 0.019337837 | GO:0003756 |
| signal peptide processing | 0.020332058 | GO:0006465 |
| endoplasmic reticulum | 0.021021737 | GO:0005783 |
| Protein export | 0.034914011 | KEGG pathway |
| tricarboxylic acid cycle | 0.044925323 | GO:0006099 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002742 | AT1G04980 (2.00E-12) | ATPDI10|PROTEIN DISULFIDE ISOMERASE 10; ATPDIL2-2|PDI-like 2-2; PDI10|PROTEIN DISULFIDE ISOMERASE |
| CRO_T008030 | AT3G53270 (5.00E-51) | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein |
| CRO_T012851 | - | - |
| CRO_T016761 | AT5G50850 (0) | MAB1|MACCI-BOU |
| CRO_T018217 | AT1G52600 (2.00E-77) | Peptidase S24/S26A/S26B/S26C family protein |
| CRO_T022205 | AT2G44100 (0) | ATGDI1|guanosine nucleotide diphosphate dissociation inhibitor 1 |
| CRO_T022826 | AT4G22753 (1.00E-24) | SMO1-3|sterol 4-alpha methyl oxidase 1-3 |
| CRO_T023466 | AT4G39460 (9.00E-18) | SAMC1|S-adenosylmethionine carrier 1; SAMT1|SAM TRANSPORTER1 |
| CRO_T029301 | AT5G08300 (1.00E-148) | Succinyl-CoA ligase, alpha subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000642 | Transcription_related, Transcription regulator: SWI/SNF-BAF60b karyogamy Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi transport complex transcription coactivator activity retrograde vesicle-mediated transport, Golgi to ER Golgi organization aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation | details |
| TissueCFM000716 | glutathione dehydrogenase (ascorbate) activity glucose-6-phosphate isomerase activity Rap1 signaling pathway Calcium signaling pathway ascorbate glutathione cycle GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) cytoskeleton Ascorbate and aldarate metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) actin binding glutathione transferase activity gluconeogenesis | details |
| TissueCFM000735 | cytosolic large ribosomal subunit Ribosome structural constituent of ribosome cytoplasmic translation positive regulation of protein kinase activity translation protein kinase activator activity preribosome, large subunit precursor ribosomal large subunit assembly translational elongation response to heat large ribosomal subunit rRNA binding heat shock protein binding protein folding | details |
| TissueCFM000872 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleocytoplasmic transport cellular response to nitrogen levels response to sucrose fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis II Apelin signaling pathway Glutathione metabolism toxin catabolic process glutathione metabolic process small GTPase mediated signal transduction RNA transport | details |
| TissueCFM001009 | proteasome core complex assembly proteasome binding glucose-6-phosphate isomerase activity Transcription_related, Transcription factor: HB GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis protein tyrosine phosphatase activity heat shock protein binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) peptidyl-tyrosine dephosphorylation response to heat glycolytic process | details |
| TissueCFM001050 | Transcription_related, Transcription factor: B3 aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) ascorbate glutathione cycle NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I cytoplasmic microtubule organization triacylglycerol degradation | details |
| TissueCFM001079 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Base excision repair Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium ion binding defense response to virus gene silencing by RNA nucleotide-excision repair oxidized purine nucleobase lesion DNA N-glycosylase activity ribonuclease P activity nucleolar ribonuclease P complex damaged DNA binding calcium-dependent phospholipid binding calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity base-excision repair RNA phosphodiester bond hydrolysis, endonucleolytic peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001121 | snRNA transcription Rab GDP-dissociation inhibitor activity maturation of LSU-rRNA regulation of catalytic activity translational elongation nucleotidyltransferase activity translation elongation factor activity protein transport small GTPase mediated signal transduction | details |
| TissueCFM001145 | adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b Golgi transport complex proton-transporting ATP synthase complex, catalytic core F(1) Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization triglyceride lipase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization ATP synthesis coupled proton transport peptidyl-prolyl cis-trans isomerase activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism cytosolic large ribosomal subunit ubiquitin-dependent protein catabolic process | details |
| TissueCFM001259 | glucose-6-phosphate isomerase activity protein tyrosine phosphatase activity peptidyl-tyrosine dephosphorylation gluconeogenesis glycolytic process GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis I glycolysis I (from glucose 6-phosphate) ligase activity Aminoacyl-tRNA biosynthesis | details |
| TissueCFM001313 | snRNA transcription formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 trehalose biosynthetic process phosphate ion transport protein sumoylation alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity SUMO transferase activity Ubiquitin_Proteasome_system, E2: UBC inorganic phosphate transmembrane transporter activity ubiquitin protein ligase binding RNA transport Starch and sucrose metabolism | details |
| TissueCFM001394 | Proteasome proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: Trihelix oxidation-reduction process regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion snRNA transcription calcium-mediated signaling proteasome assembly regulation of photomorphogenesis positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Rab GDP-dissociation inhibitor activity polyubiquitin binding maturation of LSU-rRNA glucose metabolic process L-ascorbate peroxidase activity nuclear proteasome complex cytosolic proteasome complex ER-associated ubiquitin-dependent protein catabolic process ascorbate glutathione cycle L-ascorbate degradation V | details |
| TissueCFM001578 | snRNA transcription electron transport chain magnesium ion transport magnesium ion transmembrane transport Photosynthesis magnesium ion transmembrane transporter activity 2 iron, 2 sulfur cluster binding electron carrier activity | details |
Expression profiles
 Show details about module gene expression profiling |