TissueCFM000761's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homospermidine biosynthesis | 0.001418419 | plantCyc |
| hypusine biosynthesis | 0.002126748 | plantCyc |
| deoxyhypusine synthase activity | 0.003475126 | GO:0034038 |
| homospermidine synthase (spermidine-specific) activity | 0.003475126 | GO:0050514 |
| triglyceride lipase activity | 0.006078326 | GO:0004806 |
| peptide binding | 0.006078326 | GO:0042277 |
| deoxyhypusine biosynthetic process from spermidine | 0.007709321 | GO:0050983 |
| peptidyl-lysine modification to peptidyl-hypusine | 0.007709321 | GO:0008612 |
| peptidyl-prolyl cis-trans isomerase activity | 0.029070556 | GO:0003755 |
| viral nucleocapsid | 0.033379791 | GO:0019013 |
| intracellular ribonucleoprotein complex | 0.033379791 | GO:0030529 |
| embryo sac development | 0.034203458 | GO:0009553 |
| Transcription_related, Transcription factor: LOB | 0.037488591 | TF family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.037488591 | ubs family |
| Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | 0.039504074 | ubs family |
| protein peptidyl-prolyl isomerization | 0.043546321 | GO:0000413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008047 | AT3G61415 (3.00E-12) | ASK21|SKP1-like 21 |
| CRO_T008051 | - | - |
| CRO_T017278 | AT1G20580 (5.00E-06) | Small nuclear ribonucleoprotein family protein |
| CRO_T020760 | AT3G60850 (0) | unknown protein |
| CRO_T024087 | AT3G20070 (8.00E-39) | TTN9|TITAN9 |
| CRO_T027993 | AT5G05920 (5.00E-151) | DHS|deoxyhypusine synthase; EDA22|embryo sac development arrest 22 |
| CRO_T029371 | AT3G44600 (2.00E-27) | CYP71|cyclophilin 71 |
| CRO_T031628 | AT2G21580 (1.00E-29) | Ribosomal protein S25 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000281 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: LOB response to glucose defense response to fungus cell surface receptor signaling pathway response to salt stress response to abscisic acid zinc ion binding | details |
| TissueCFM000366 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity inosine-5'-phosphate biosynthesis II 'de novo' AMP biosynthetic process protein tetramerization Transcription_related, Transcription factor: LOB 'de novo' IMP biosynthetic process adenosine ribonucleotides de novo biosynthesis response to stress helicase activity unfolded protein binding | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000927 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein N-glycosylation (eukaryotic, high mannose) regulation of mitotic metaphase/anaphase transition oligosaccharide-lipid intermediate biosynthetic process protein N-linked glycosylation Transcription_related, Transcription factor: LOB anaphase-promoting complex DNA biosynthetic process DNA-directed DNA polymerase activity nucleotidyltransferase activity biosynthetic process DNA replication Fructose and mannose metabolism N-Glycan biosynthesis Ubiquitin mediated proteolysis | details |
| TissueCFM001132 | alpha-1,4-glucan synthase activity starch synthase activity starch biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process Transcription_related, Transcription factor: LOB amyloplast Starch and sucrose metabolism methyltransferase activity | details |
| TissueCFM001145 | adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b Golgi transport complex proton-transporting ATP synthase complex, catalytic core F(1) Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization triglyceride lipase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization ATP synthesis coupled proton transport peptidyl-prolyl cis-trans isomerase activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism cytosolic large ribosomal subunit ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |