TissueCFM001132's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| alpha-1,4-glucan synthase activity | 0.002954864 | GO:0033201 |
| starch synthase activity | 0.002954864 | GO:0009011 |
| starch biosynthesis | 0.003895237 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003899268 | cazy family |
| Transcription_related, Transcription factor: CPP | 0.003899268 | TF family |
| amylopectin biosynthetic process | 0.003900421 | GO:0010021 |
| glycogen (starch) synthase activity | 0.004430659 | GO:0004373 |
| starch biosynthetic process | 0.008766873 | GO:0019252 |
| Transcription_related, Transcription factor: LOB | 0.010703199 | TF family |
| amyloplast | 0.015587856 | GO:0009501 |
| Starch and sucrose metabolism | 0.023182294 | KEGG pathway |
| methyltransferase activity | 0.035582424 | GO:0008168 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002786 | AT5G24300 (0) | ATSS1|STARCH SYNTHASE 1 |
| CRO_T003533 | AT5G01470 (2.00E-94) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T007796 | AT3G29280 (3.00E-60) | unknown protein |
| CRO_T007925 | AT2G20110 (4.00E-30) | Tesmin/TSO1-like CXC domain-containing protein |
| CRO_T016163 | AT3G08780 (1.00E-39) | unknown protein |
| CRO_T020760 | AT3G60850 (0) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000269 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) structural constituent of ribosome cytoplasmic translation poly(A) RNA binding Ribosome mitotic recombination-dependent replication fork processing uridylyltransferase activity chromosome organization involved in meiotic cell cycle DNA recombinase assembly reciprocal meiotic recombination response to ionizing radiation mitotic recombination strand invasion spliceosomal complex assembly cytosolic large ribosomal subunit translation potassium ion binding recombinase activity pyruvate kinase activity DNA-dependent ATPase activity four-way junction DNA binding Rho guanyl-nucleotide exchange factor activity endodeoxyribonuclease activity Transcription_related, Transcription factor: LOB | details |
| TissueCFM000281 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: LOB response to glucose defense response to fungus cell surface receptor signaling pathway response to salt stress response to abscisic acid zinc ion binding | details |
| TissueCFM000358 | details | |
| TissueCFM000366 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity inosine-5'-phosphate biosynthesis II 'de novo' AMP biosynthetic process protein tetramerization Transcription_related, Transcription factor: LOB 'de novo' IMP biosynthetic process adenosine ribonucleotides de novo biosynthesis response to stress helicase activity unfolded protein binding | details |
| TissueCFM000693 | pentose phosphate pathway (oxidative branch) I UDP-glucose biosynthesis ER to Golgi transport vesicle stachyose degradation sucrose biosynthesis II uridylyltransferase activity glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: LOB Rho guanyl-nucleotide exchange factor activity structural constituent of ribosome pentose-phosphate shunt maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) glucose metabolic process poly(A) RNA binding cytoplasmic translation DNA metabolic process | details |
| TissueCFM000761 | homospermidine biosynthesis hypusine biosynthesis deoxyhypusine synthase activity homospermidine synthase (spermidine-specific) activity triglyceride lipase activity peptide binding deoxyhypusine biosynthetic process from spermidine peptidyl-lysine modification to peptidyl-hypusine peptidyl-prolyl cis-trans isomerase activity viral nucleocapsid intracellular ribonucleoprotein complex embryo sac development Transcription_related, Transcription factor: LOB Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization | details |
| TissueCFM000764 | base-excision repair response to salt stress Base excision repair precatalytic spliceosome catalytic activity Spliceosome | details |
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM000927 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein N-glycosylation (eukaryotic, high mannose) regulation of mitotic metaphase/anaphase transition oligosaccharide-lipid intermediate biosynthetic process protein N-linked glycosylation Transcription_related, Transcription factor: LOB anaphase-promoting complex DNA biosynthetic process DNA-directed DNA polymerase activity nucleotidyltransferase activity biosynthetic process DNA replication Fructose and mannose metabolism N-Glycan biosynthesis Ubiquitin mediated proteolysis | details |
| TissueCFM001229 | Ubiquitin_Proteasome_system, E1: ThiF Pentose phosphate pathway S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I Renin-angiotensin system protein neddylation D-ribose metabolic process ribokinase activity dipeptidyl-peptidase activity acid-amino acid ligase activity NEDD8 activating enzyme activity ribosomal large subunit binding base-excision repair carbohydrate phosphorylation Base excision repair ribosome binding ATP binding serine-type carboxypeptidase activity | details |
| TissueCFM001332 | nuclear nucleosome Viral carcinogenesis triacylglycerol degradation chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization endoplasmic reticulum membrane lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |