TissueCFM000763's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V | 0.004253747 | kinase family |
| cullin deneddylation | 0.005907982 | GO:0010388 |
| peptide metabolic process | 0.005907982 | GO:0006518 |
| NF-kappa B signaling pathway | 0.008130157 | KEGG pathway |
| proteasome complex | 0.034376359 | GO:0000502 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002552 | AT3G12940 (0) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T005236 | AT4G34500 (8.00E-156) | Protein kinase superfamily protein |
| CRO_T016026 | AT4G01960 (7.00E-08) | unknown protein |
| CRO_T023956 | AT2G26990 (0) | COP12|CONSTITUTIVE PHOTOMORPHOGENIC 12; FUS12|FUSCA 12 |
| CRO_T027468 | AT5G10540 (0) | TOP2|thimet metalloendopeptidase 2 |
| CRO_T027795 | AT3G16070 (5.00E-13) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000382 | O-acetyltransferase activity cell wall organization or biogenesis amidophosphoribosyltransferase activity purine nucleobase biosynthetic process peptide metabolic process Golgi apparatus 5-aminoimidazole ribonucleotide biosynthesis I Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V nucleoside metabolic process Transcription_related, Transcription factor: C2C2-Dof integral component of membrane hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ajmaline and sarpagine biosynthesis benzoate biosynthesis I (CoA-dependent, β-oxidative) homogalacturonan degradation NF-kappa B signaling pathway | details |
| TissueCFM000703 | Cytochrome_P450, Cytochrome P450: CYP718A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc (+)-abscisic acid 8'-hydroxylase activity Transcription_related, Transcription factor: Orphans protein kinase binding phosphorelay signal transduction system regulation of cyclin-dependent protein serine/threonine kinase activity brassinosteroid homeostasis sterol metabolic process brassinosteroid biosynthetic process Plant hormone signal transduction multicellular organism development | details |
| TissueCFM000776 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II peptide metabolic process Transcription_related, Transcription factor: C2C2-Dof cell wall organization or biogenesis Plant hormone signal transduction metalloendopeptidase activity O-acetyltransferase activity | details |
| TissueCFM000838 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V peptide metabolic process NF-kappa B signaling pathway cell wall organization or biogenesis response to stress metalloendopeptidase activity O-acetyltransferase activity | details |
| TissueCFM000846 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex nucleoplasm calcium-dependent phospholipid binding RNA transport FMN binding response to stimulus | details |
| TissueCFM001169 | 5-aminoimidazole ribonucleotide biosynthesis I Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V purine nucleobase biosynthetic process peptide metabolic process phosphorylation nucleoside metabolic process regulation of cyclin-dependent protein serine/threonine kinase activity amidophosphoribosyltransferase activity cell wall organization or biogenesis NF-kappa B signaling pathway protein kinase binding Purine metabolism O-acetyltransferase activity metalloendopeptidase activity | details |
| TissueCFM001317 | cullin deneddylation protein deacetylation protein ADP-ribosylation Golgi vesicle transport NAD-dependent protein deacetylase activity NAD+ binding regulation of flower development vesicle docking protein glycosylation vesicle fusion formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB galactosyltransferase activity SNAP receptor activity SNARE binding SNARE complex proteasome complex mitochondrial matrix | details |
| TissueCFM001318 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II Transcription_related, Transcription factor: BES1 formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 cullin deneddylation Golgi vesicle transport brassinosteroid mediated signaling pathway vesicle docking vesicle fusion protein glycosylation Plant hormone signal transduction SNARE binding galactosyltransferase activity SNAP receptor activity proteasome complex | details |
| TissueCFM001402 | regulation of cell adhesion cullin deneddylation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex proteasome complex | details |
| TissueCFM001529 | ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3: RING threonyl-tRNA aminoacylation retrograde protein transport, ER to cytosol positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cullin deneddylation positive regulation of proteasomal protein catabolic process threonine-tRNA ligase activity endoplasmic reticulum lumen nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome complex TBP-class protein binding proteasome-activating ATPase activity response to salt stress zinc ion binding Aminoacyl-tRNA biosynthesis Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |