TissueCFM001317's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cullin deneddylation | 0.012111394 | GO:0010388 |
| protein deacetylation | 0.012111394 | GO:0006476 |
| protein ADP-ribosylation | 0.012111394 | GO:0006471 |
| Golgi vesicle transport | 0.012111394 | GO:0048193 |
| NAD-dependent protein deacetylase activity | 0.01211569 | GO:0034979 |
| NAD+ binding | 0.01211569 | GO:0070403 |
| regulation of flower development | 0.020572947 | GO:0009909 |
| vesicle docking | 0.021170525 | GO:0048278 |
| protein glycosylation | 0.024171304 | GO:0006486 |
| vesicle fusion | 0.024171304 | GO:0006906 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.028886633 | cazy family |
| Transcription_related, Transcription factor: B3 | 0.028886633 | TF family |
| Transcription_related, Transcription factor: MYB | 0.034240303 | TF family |
| galactosyltransferase activity | 0.038315362 | GO:0008378 |
| SNAP receptor activity | 0.047104807 | GO:0005484 |
| SNARE binding | 0.047104807 | GO:0000149 |
| SNARE complex | 0.048649227 | GO:0031201 |
| proteasome complex | 0.048649227 | GO:0000502 |
| mitochondrial matrix | 0.048649227 | GO:0005759 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001181 | AT1G12110 (4.00E-80) | ATNRT1|NITRATE TRANSPORTER 1; CHL1|CHLORINA 1; NPF6.3|NRT1/ PTR family 6.3; NRT1.1|nitrate transporter 1.1 |
| CRO_T001434 | AT1G07160 (1.00E-29) | Protein phosphatase 2C family protein |
| CRO_T006817 | AT2G23470 (1.00E-157) | RUS4|ROOT UV-B SENSITIVE 4 |
| CRO_T013205 | AT5G09230 (8.00E-84) | AtSRT2|SIRTUIN 2 |
| CRO_T023956 | AT2G26990 (0) | COP12|CONSTITUTIVE PHOTOMORPHOGENIC 12; FUS12|FUSCA 12 |
| CRO_T026551 | AT3G61250 (3.00E-88) | AtMYB17|myb domain protein 17; LMI2|LATE MERISTEM IDENTITY2 |
| CRO_T029920 | AT1G27700 (6.00E-79) | Syntaxin/t-SNARE family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000441 | Pyrimidine metabolism uridylate kinase activity cytidylate kinase activity transcription factor activity, transcription factor binding NAD-dependent protein deacetylase activity NAD+ binding protein deacetylation CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis photomorphogenesis protein ADP-ribosylation pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: Orphans pyrimidine ribonucleotides interconversion zinc ion binding amino acid binding | details |
| TissueCFM000763 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cullin deneddylation peptide metabolic process NF-kappa B signaling pathway proteasome complex | details |
| TissueCFM001318 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II Transcription_related, Transcription factor: BES1 formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: B3 cullin deneddylation Golgi vesicle transport brassinosteroid mediated signaling pathway vesicle docking vesicle fusion protein glycosylation Plant hormone signal transduction SNARE binding galactosyltransferase activity SNAP receptor activity proteasome complex | details |
| TissueCFM001402 | regulation of cell adhesion cullin deneddylation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex proteasome complex | details |
| TissueCFM001529 | ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3: RING threonyl-tRNA aminoacylation retrograde protein transport, ER to cytosol positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cullin deneddylation positive regulation of proteasomal protein catabolic process threonine-tRNA ligase activity endoplasmic reticulum lumen nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome complex TBP-class protein binding proteasome-activating ATPase activity response to salt stress zinc ion binding Aminoacyl-tRNA biosynthesis Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |