TissueCFM000770's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| spindle microtubule | 0.002790903 | GO:0005876 |
| HAUS complex | 0.002790903 | GO:0070652 |
| rRNA methylation | 0.006877839 | GO:0031167 |
| DNA recombinase assembly | 0.006877839 | GO:0000730 |
| mitotic recombination | 0.006877839 | GO:0006312 |
| strand invasion | 0.006877839 | GO:0042148 |
| spindle assembly | 0.006877839 | GO:0051225 |
| response to ionizing radiation | 0.006877839 | GO:0010212 |
| recombinase activity | 0.009474451 | GO:0000150 |
| endodeoxyribonuclease activity | 0.009474451 | GO:0004520 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.009474451 | GO:0000179 |
| microtubule minus-end binding | 0.009474451 | GO:0051011 |
| four-way junction DNA binding | 0.009474451 | GO:0000400 |
| response to cold | 0.009640854 | GO:0009409 |
| DNA-dependent ATPase activity | 0.012276252 | GO:0008094 |
| Homologous recombination | 0.013166602 | KEGG pathway |
| single-stranded DNA binding | 0.016523637 | GO:0003697 |
| double-stranded DNA binding | 0.019701726 | GO:0003690 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007449 | AT1G79050 (1.00E-135) | RECA1|homolog of bacterial RecA |
| CRO_T007907 | - | - |
| CRO_T016717 | AT1G01860 (1.00E-115) | PFC1|PALEFACE 1 |
| CRO_T018304 | AT1G08790 (5.00E-21) | Protein of unknown function (DUF1685) |
| CRO_T026830 | AT1G50710 (8.00E-119) | 4-Aug|augmin subunit 4 |
| CRO_T027892 | AT1G29395 (5.00E-24) | COR413-TM1|COLD REGULATED 314 THYLAKOID MEMBRANE 1; COR413IM1|COLD REGULATED 314 INNER MEMBRANE 1; COR414-TM1|cold regulated 414 thylakoid membrane 1 |
| CRO_T030128 | AT1G78895 (2.00E-48) | Reticulon family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000793 | microtubule minus-end binding spindle assembly HAUS complex spindle microtubule | details |
| TissueCFM000803 | protein phosphorylation protein kinase activity ATP binding integral component of membrane Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription regulator: MBF1 microtubule minus-end binding transmembrane receptor protein tyrosine kinase activity protein serine/threonine kinase activity | details |
| TissueCFM000961 | biotin biosynthesis from 8-amino-7-oxononanoate I adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism microtubule minus-end binding 3'-5'-exoribonuclease activity nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic spindle assembly biotin biosynthetic process HAUS complex spindle microtubule CCR4-NOT complex protein transport identical protein binding RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc embryo development ending in seed dormancy | details |
| TissueCFM001047 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane cytoskeleton HAUS complex spindle microtubule hydrolase activity, hydrolyzing O-glycosyl compounds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI microtubule minus-end binding protein kinase activity spindle assembly carbohydrate metabolic process Starch and sucrose metabolism | details |
| TissueCFM001316 | spindle microtubule cytoskeleton HAUS complex detection of light stimulus signaling receptor activity cellular protein modification process spindle assembly microtubule minus-end binding Plant-pathogen interaction adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD | details |
| TissueCFM001360 | Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I positive regulation of mitochondrial translation mitochondrial respiratory chain complex IV assembly integral component of mitochondrial inner membrane Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway phosphoprotein phosphatase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calmodulin binding protein dephosphorylation intracellular signal transduction | details |
| TissueCFM001478 | rRNA (adenine-N6,N6-)-dimethyltransferase activity L-serine biosynthesis damaged DNA binding oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor nucleotide-excision repair rRNA methylation photorespiration response to cold NAD binding very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process response to stress Fatty acid metabolism | details |
| TissueCFM001680 | cytochrome b6f complex assembly nucleotide-excision repair damaged DNA binding proteasome-mediated ubiquitin-dependent protein catabolic process Protein processing in endoplasmic reticulum kinase activity | details |
| TissueCFM001725 | Choline metabolism in cancer mannitol degradation II mannokinase activity glucose binding glucokinase activity fructokinase activity glucose 6-phosphate metabolic process cellular glucose homeostasis MAP kinase kinase kinase activity carbohydrate phosphorylation activation of MAPKK activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII MAPK cascade glycolytic process multicellular organism development | details |
| TissueCFM001781 | calcium-dependent cysteine-type endopeptidase activity nucleotide-excision repair vacuolar proton-transporting V-type ATPase complex assembly endoplasmic reticulum-Golgi intermediate compartment membrane damaged DNA binding COPII vesicle coat very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process Fatty acid metabolism Plant-pathogen interaction | details |
Expression profiles
 Show details about module gene expression profiling |