TissueCFM001360's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I | 0.005687189 | kinase family |
| positive regulation of mitochondrial translation | 0.007509087 | GO:0070131 |
| mitochondrial respiratory chain complex IV assembly | 0.011259636 | GO:0033617 |
| integral component of mitochondrial inner membrane | 0.013783459 | GO:0031305 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.016457794 | kinase family |
| mRNA surveillance pathway | 0.017250568 | KEGG pathway |
| phosphoprotein phosphatase activity | 0.035290319 | GO:0004721 |
| calmodulin-dependent protein kinase activity | 0.035290319 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.035290319 | GO:0009931 |
| abscisic acid-activated signaling pathway | 0.039618641 | GO:0009738 |
| peptidyl-serine phosphorylation | 0.039618641 | GO:0018105 |
| protein autophosphorylation | 0.039618641 | GO:0046777 |
| calmodulin binding | 0.039914255 | GO:0005516 |
| protein dephosphorylation | 0.047369665 | GO:0006470 |
| intracellular signal transduction | 0.047369665 | GO:0035556 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002310 | AT2G43780 (3.00E-14) | unknown protein |
| CRO_T002508 | AT1G67720 (0) | Leucine-rich repeat protein kinase family protein |
| CRO_T007946 | AT1G77710 (1.00E-39) | CCP2|conserved in ciliated species and in the land plants 2 |
| CRO_T010254 | AT2G42810 (2.00E-55) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T018002 | AT1G28200 (3.00E-93) | FIP1|FH interacting protein 1 |
| CRO_T018304 | AT1G08790 (5.00E-21) | Protein of unknown function (DUF1685) |
| CRO_T032122 | AT1G12680 (2.00E-138) | PEPKR2|phosphoenolpyruvate carboxylase-related kinase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM000371 | positive regulation of mitochondrial translation mitochondrial respiratory chain complex IV assembly integral component of mitochondrial inner membrane cell part cytosolic large ribosomal subunit | details |
| TissueCFM000770 | spindle microtubule HAUS complex rRNA methylation DNA recombinase assembly mitotic recombination strand invasion spindle assembly response to ionizing radiation recombinase activity endodeoxyribonuclease activity rRNA (adenine-N6,N6-)-dimethyltransferase activity microtubule minus-end binding four-way junction DNA binding response to cold DNA-dependent ATPase activity Homologous recombination single-stranded DNA binding double-stranded DNA binding | details |
| TissueCFM000803 | protein phosphorylation protein kinase activity ATP binding integral component of membrane Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription regulator: MBF1 microtubule minus-end binding transmembrane receptor protein tyrosine kinase activity protein serine/threonine kinase activity | details |
| TissueCFM001291 | plasma membrane cytoplasm intracellular signal transduction endoplasmic reticulum-Golgi intermediate compartment membrane nitrogen fixation oxygen transport vacuolar proton-transporting V-type ATPase complex assembly Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase calcium-dependent cysteine-type endopeptidase activity oxygen transporter activity oxygen binding COPII vesicle coat carbohydrate transmembrane transport MAPK signaling pathway - plant Plant-pathogen interaction peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation | details |
| TissueCFM001294 | CO2 fixation into oxaloacetate (anaplerotic) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cytoplasm L-glutamine biosynthesis III phosphoenolpyruvate carboxylase activity glutathione binding diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolysis IV (plant cytosol) 6-phosphofructokinase activity translational elongation peptidyl-serine phosphorylation carbon fixation tricarboxylic acid cycle auxin-activated signaling pathway leaf development protein autophosphorylation carbohydrate phosphorylation abscisic acid-activated signaling pathway glutathione metabolic process glycolytic process through fructose-6-phosphate Glutathione metabolism Glycolysis / Gluconeogenesis glutathione transferase activity nucleotidyltransferase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity translation elongation factor activity stromule intracellular signal transduction | details |
| TissueCFM001778 | Carbon metabolism L-serine biosynthesis spermidine biosynthesis I spermine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthetic process spermine biosynthetic process S-adenosylmethioninamine biosynthetic process spermidine biosynthetic process Cysteine and methionine metabolism adenosylmethionine decarboxylase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity FMN binding protein serine/threonine phosphatase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation calmodulin binding | details |
Expression profiles
 Show details about module gene expression profiling |