TissueCFM001725's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Choline metabolism in cancer | 0.001595745 | KEGG pathway |
| mannitol degradation II | 0.003364814 | plantCyc |
| mannokinase activity | 0.006434743 | GO:0019158 |
| glucose binding | 0.006434743 | GO:0005536 |
| glucokinase activity | 0.006434743 | GO:0004340 |
| fructokinase activity | 0.009647837 | GO:0008865 |
| glucose 6-phosphate metabolic process | 0.009652115 | GO:0051156 |
| cellular glucose homeostasis | 0.009652115 | GO:0001678 |
| MAP kinase kinase kinase activity | 0.012856181 | GO:0004709 |
| carbohydrate phosphorylation | 0.016872491 | GO:0046835 |
| activation of MAPKK activity | 0.016872491 | GO:0000186 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.0194503 | cazy family |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.0194503 | kinase family |
| MAPK cascade | 0.019795067 | GO:0000165 |
| glycolytic process | 0.019795067 | GO:0006096 |
| multicellular organism development | 0.025187998 | GO:0007275 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005015 | AT5G44280 (9.00E-50) | ATRING1A|RING 1A |
| CRO_T008126 | - | - |
| CRO_T009089 | AT1G24030 (7.00E-167) | Protein kinase superfamily protein |
| CRO_T019105 | AT3G15380 (0) | Plasma-membrane choline transporter family protein |
| CRO_T026255 | AT1G47840 (2.00E-177) | HXK3|hexokinase 3 |
| CRO_T030128 | AT1G78895 (2.00E-48) | Reticulon family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000494 | homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 pectin biosynthetic process phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation 1-phosphatidylinositol 4-kinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism Inositol phosphate metabolism | details |
| TissueCFM000770 | spindle microtubule HAUS complex rRNA methylation DNA recombinase assembly mitotic recombination strand invasion spindle assembly response to ionizing radiation recombinase activity endodeoxyribonuclease activity rRNA (adenine-N6,N6-)-dimethyltransferase activity microtubule minus-end binding four-way junction DNA binding response to cold DNA-dependent ATPase activity Homologous recombination single-stranded DNA binding double-stranded DNA binding | details |
| TissueCFM001478 | rRNA (adenine-N6,N6-)-dimethyltransferase activity L-serine biosynthesis damaged DNA binding oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor nucleotide-excision repair rRNA methylation photorespiration response to cold NAD binding very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process response to stress Fatty acid metabolism | details |
| TissueCFM001540 | Cytochrome_P450, Cytochrome P450: CYP724A brassinosteroid biosynthesis I brassinosteroid biosynthesis II kinase activity Brassinosteroid biosynthesis skotomorphogenesis phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII activation of MAPKK activity MAPK cascade brassinosteroid biosynthetic process brassinosteroid homeostasis sterol metabolic process ribosomal small subunit assembly MAP kinase kinase kinase activity | details |
| TissueCFM001680 | cytochrome b6f complex assembly nucleotide-excision repair damaged DNA binding proteasome-mediated ubiquitin-dependent protein catabolic process Protein processing in endoplasmic reticulum kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |