TissueCFM001409's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleolus | 0.001519188 | GO:0005730 |
| photorespiration | 0.003718455 | plantCyc |
| positive regulation of transport | 0.005213151 | GO:0051050 |
| protein binding involved in protein folding | 0.008096328 | GO:0044183 |
| megagametogenesis | 0.015627901 | GO:0009561 |
| cytosol | 0.018110354 | GO:0005829 |
| phosphatase activity | 0.023244289 | GO:0016791 |
| ribosomal large subunit assembly | 0.023415886 | GO:0000027 |
| rRNA processing | 0.026640523 | GO:0006364 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| unfolded protein binding | 0.03696861 | GO:0051082 |
| dephosphorylation | 0.043011 | GO:0016311 |
| Ribosome biogenesis in eukaryotes | 0.044939697 | KEGG pathway |
| protein folding | 0.046552397 | GO:0006457 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004668 | AT4G15900 (3.00E-15) | PRL1|pleiotropic regulatory locus 1 |
| CRO_T017303 | AT5G47760 (4.00E-97) | ATPGLP2|2-phosphoglycolate phosphatase 2 |
| CRO_T024040 | AT1G69510 (5.00E-21) | cAMP-regulated phosphoprotein 19-related protein |
| CRO_T025813 | AT3G15460 (4.00E-83) | Ribosomal RNA processing Brix domain protein |
| CRO_T027131 | AT5G01110 (1.00E-19) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T033134 | AT3G03960 (0) | TCP-1/cpn60 chaperonin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000787 | photorespiration tRNA aminoacylation for protein translation outer membrane formation of translation preinitiation complex aminoacyl-tRNA ligase activity phosphatase activity dephosphorylation GTPase activity translation initiation factor activity | details |
| TissueCFM001068 | RNA transport photorespiration tRNA (guanine) methyltransferase activity chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution nuclear pore outer ring condensed chromosome kinetochore RNA export from nucleus RNA polymerase I activity nucleocytoplasmic transporter activity structural constituent of nuclear pore DNA-directed RNA polymerase I complex phosphatase activity tRNA methylation protein import into nucleus dephosphorylation | details |
| TissueCFM001655 | cell-cell signaling argininosuccinate metabolic process production of siRNA involved in chromatin silencing by small RNA long-distance posttranscriptional gene silencing response to high light intensity urea cycle production of siRNA involved in RNA interference response to hydrogen peroxide transcription, RNA-templated arginine biosynthetic process argininosuccinate synthase activity defense response to fungus response to heat ribosome biogenesis RNA-directed RNA polymerase activity DNA-directed RNA polymerase III complex mitochondrion RNA polymerase III activity | details |
| TissueCFM001656 | Transcription_related, Transcription regulator: mTERF negative regulation of microtubule depolymerization microtubule plus-end binding cortical microtubule organization protein stabilization mitotic nuclear division cell growth cell cortex spindle microtubule ribosome biogenesis RNA secondary structure unwinding phragmoplast | details |
| TissueCFM001689 | SCF complex assembly N-terminal peptidyl-methionine acetylation Transcription_related, Transcription factor: M-type xylem and phloem pattern formation peptide alpha-N-acetyltransferase activity amino acid binding vegetative to reproductive phase transition of meristem ribosomal large subunit assembly response to auxin | details |
Expression profiles
 Show details about module gene expression profiling |