TissueCFM000805's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleus | 0.006612159 | GO:0005634 |
| 3'-5'-exoribonuclease activity | 0.007383886 | GO:0000175 |
| histone-lysine N-methyltransferase activity | 0.007383886 | GO:0018024 |
| CCR4-NOT complex | 0.009105005 | GO:0030014 |
| nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 0.010713484 | GO:0000288 |
| actin filament organization | 0.010713484 | GO:0007015 |
| histone lysine methylation | 0.010713484 | GO:0034968 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.010713484 | GO:0090503 |
| multidimensional cell growth | 0.010713484 | GO:0009825 |
| trichome morphogenesis | 0.010713484 | GO:0010090 |
| Regulation of actin cytoskeleton | 0.012746164 | KEGG pathway |
| Transcription_related, Transcription regulator: SET | 0.018573055 | TF family |
| positive regulation of transcription, DNA-templated | 0.019252952 | GO:0045893 |
| RNA degradation | 0.019577886 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002005 | AT3G26350 (7.00E-53) | LOCATED IN: chloroplast |
| CRO_T012431 | AT4G29870 (1.00E-51) | Oligosaccharyltransferase complex/magnesium transporter family protein |
| CRO_T020899 | AT2G35110 (1.00E-50) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
| CRO_T021318 | AT5G42400 (1.00E-19) | ATXR7|ARABIDOPSIS TRITHORAX-RELATED7; SDG25|SET domain protein 25 |
| CRO_T022759 | AT3G44260 (7.00E-102) | AtCAF1a|CCR4- associated factor 1a |
| CRO_T032239 | AT4G20770 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000372 | UDP-D-xylose biosynthesis RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity UDP-glucuronate decarboxylase activity CCR4-NOT complex Amino sugar and nucleotide sugar metabolism RNA degradation | details |
| TissueCFM000961 | biotin biosynthesis from 8-amino-7-oxononanoate I adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism microtubule minus-end binding 3'-5'-exoribonuclease activity nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic spindle assembly biotin biosynthetic process HAUS complex spindle microtubule CCR4-NOT complex protein transport identical protein binding RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc embryo development ending in seed dormancy | details |
| TissueCFM001648 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ajugose biosynthesis II (galactinol-independent) RNA phosphodiester bond hydrolysis, exonucleolytic polysaccharide catabolic process nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay glycolytic process pyruvate kinase activity 3'-5'-exoribonuclease activity potassium ion binding CCR4-NOT complex glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Plant-pathogen interaction RNA degradation | details |
Expression profiles
 Show details about module gene expression profiling |