TissueCFM001648's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.003190782 | cazy family |
| ajugose biosynthesis II (galactinol-independent) | 0.005909729 | plantCyc |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.007381159 | GO:0090503 |
| polysaccharide catabolic process | 0.007381159 | GO:0000272 |
| nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 0.007381159 | GO:0000288 |
| glycolytic process | 0.013632967 | GO:0006096 |
| pyruvate kinase activity | 0.016693165 | GO:0004743 |
| 3'-5'-exoribonuclease activity | 0.016693165 | GO:0000175 |
| potassium ion binding | 0.016693165 | GO:0030955 |
| CCR4-NOT complex | 0.01821001 | GO:0030014 |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| Plant-pathogen interaction | 0.036857422 | KEGG pathway |
| RNA degradation | 0.036857422 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002005 | AT3G26350 (7.00E-53) | LOCATED IN: chloroplast |
| CRO_T006414 | AT5G09570 (1.00E-32) | Cox19-like CHCH family protein |
| CRO_T012431 | AT4G29870 (1.00E-51) | Oligosaccharyltransferase complex/magnesium transporter family protein |
| CRO_T022759 | AT3G44260 (7.00E-102) | AtCAF1a|CCR4- associated factor 1a |
| CRO_T028778 | AT3G07490 (4.00E-61) | AGD11|ARF-GAP domain 11; CML3|calmodulin-like 3 |
| CRO_T031680 | AT3G04050 (0) | Pyruvate kinase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000372 | UDP-D-xylose biosynthesis RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity UDP-glucuronate decarboxylase activity CCR4-NOT complex Amino sugar and nucleotide sugar metabolism RNA degradation | details |
| TissueCFM000783 | ajugose biosynthesis II (galactinol-independent) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, DUB: ULP pyruvate kinase activity cysteine-type peptidase activity potassium ion binding membrane coat Lysosome glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt intracellular transport formation of glycosidic bonds, GlycosylTransferases: GTnc cytochrome complex assembly | details |
| TissueCFM000805 | nucleus 3'-5'-exoribonuclease activity histone-lysine N-methyltransferase activity CCR4-NOT complex nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay actin filament organization histone lysine methylation RNA phosphodiester bond hydrolysis, exonucleolytic multidimensional cell growth trichome morphogenesis Regulation of actin cytoskeleton Transcription_related, Transcription regulator: SET positive regulation of transcription, DNA-templated RNA degradation | details |
| TissueCFM000961 | biotin biosynthesis from 8-amino-7-oxononanoate I adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism microtubule minus-end binding 3'-5'-exoribonuclease activity nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic spindle assembly biotin biosynthetic process HAUS complex spindle microtubule CCR4-NOT complex protein transport identical protein binding RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc embryo development ending in seed dormancy | details |
| TissueCFM001463 | Transcriptional misregulation in cancers oxalate catabolic process positive regulation of seed germination protein targeting glucose catabolic process seed coat development oxalate-CoA ligase activity 4-coumarate-CoA ligase activity defense response to fungus response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity | details |
Expression profiles
 Show details about module gene expression profiling |