TissueCFM000372's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-D-xylose biosynthesis | 0.002126245 | plantCyc |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.010334386 | GO:0090503 |
| nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 0.010334386 | GO:0000288 |
| 3'-5'-exoribonuclease activity | 0.013025176 | GO:0000175 |
| UDP-glucuronate decarboxylase activity | 0.013025176 | GO:0048040 |
| CCR4-NOT complex | 0.01821001 | GO:0030014 |
| Amino sugar and nucleotide sugar metabolism | 0.021418771 | KEGG pathway |
| RNA degradation | 0.021418771 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002903 | AT3G14470 (6.00E-117) | NB-ARC domain-containing disease resistance protein |
| CRO_T003539 | AT1G08200 (1.00E-27) | AXS2|UDP-D-apiose/UDP-D-xylose synthase 2 |
| CRO_T016538 | AT5G23520 (3.00E-41) | smr (Small MutS Related) domain-containing protein |
| CRO_T022759 | AT3G44260 (7.00E-102) | AtCAF1a|CCR4- associated factor 1a |
| CRO_T024514 | AT3G14470 (1.00E-30) | NB-ARC domain-containing disease resistance protein |
| CRO_T025892 | AT5G07320 (1.00E-16) | APC3|ATP/phosphate carrier 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000188 | details | |
| TissueCFM000367 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit clathrin-mediated endocytosis clathrin heavy chain binding structural molecule activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000805 | nucleus 3'-5'-exoribonuclease activity histone-lysine N-methyltransferase activity CCR4-NOT complex nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay actin filament organization histone lysine methylation RNA phosphodiester bond hydrolysis, exonucleolytic multidimensional cell growth trichome morphogenesis Regulation of actin cytoskeleton Transcription_related, Transcription regulator: SET positive regulation of transcription, DNA-templated RNA degradation | details |
| TissueCFM000961 | biotin biosynthesis from 8-amino-7-oxononanoate I adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism microtubule minus-end binding 3'-5'-exoribonuclease activity nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic spindle assembly biotin biosynthetic process HAUS complex spindle microtubule CCR4-NOT complex protein transport identical protein binding RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc embryo development ending in seed dormancy | details |
| TissueCFM001316 | spindle microtubule cytoskeleton HAUS complex detection of light stimulus signaling receptor activity cellular protein modification process spindle assembly microtubule minus-end binding Plant-pathogen interaction adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD | details |
| TissueCFM001642 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication meiotic nuclear division response to nematode detection of light stimulus glucose catabolic process protein targeting mitotic spindle assembly growth cortical microtubule organization microtubule minus-end binding signaling receptor activity gamma-tubulin binding intracellular transport cellular protein modification process Transcriptional misregulation in cancers Lysosome equatorial microtubule organizing center gamma-tubulin complex structural constituent of cytoskeleton membrane coat nucleosome protein heterodimerization activity protein transport | details |
| TissueCFM001648 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ajugose biosynthesis II (galactinol-independent) RNA phosphodiester bond hydrolysis, exonucleolytic polysaccharide catabolic process nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay glycolytic process pyruvate kinase activity 3'-5'-exoribonuclease activity potassium ion binding CCR4-NOT complex glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Plant-pathogen interaction RNA degradation | details |
| TissueCFM001841 | UDP-D-xylose biosynthesis vacuolar membrane regulation of plant-type hypersensitive response interstrand cross-link repair hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides UDP-glucuronate decarboxylase activity nuclease activity proteasome core complex threonine-type endopeptidase activity Fanconi anemia pathway Proteasome Amino sugar and nucleotide sugar metabolism nucleic acid phosphodiester bond hydrolysis proteolysis involved in cellular protein catabolic process S-adenosylmethionine-dependent methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |