TissueCFM000823's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytokinin-O-glucosides biosynthesis | 0.006366026 | plantCyc |
| Transcription_related, Transcription factor: SRS | 0.011076976 | TF family |
| Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase | 0.017700133 | kinase family |
| NF-kappa B signaling pathway | 0.018254818 | KEGG pathway |
| Zeatin biosynthesis | 0.018254818 | KEGG pathway |
| UDP-glycosyltransferase activity | 0.027077862 | GO:0008194 |
| cellular developmental process | 0.032979581 | GO:0048869 |
| embryo development | 0.041601708 | GO:0009790 |
| root development | 0.041601708 | GO:0048364 |
| organic substance metabolic process | 0.041601708 | GO:0071704 |
| post-embryonic development | 0.041601708 | GO:0009791 |
| potassium ion transmembrane transport | 0.041601708 | GO:0071805 |
| regulation of membrane potential | 0.041601708 | GO:0042391 |
| chaperone-mediated protein folding | 0.041601708 | GO:0061077 |
| primary metabolic process | 0.041601708 | GO:0044238 |
| cellular metabolic process | 0.041601708 | GO:0044237 |
| FK506 binding | 0.042797336 | GO:0005528 |
| voltage-gated potassium channel activity | 0.042797336 | GO:0005249 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006194 | AT3G25230 (1.00E-50) | FKBP62|FK506 BINDING PROTEIN 62; ROF1|rotamase FKBP 1 |
| CRO_T007297 | AT1G01340 (2.00E-10) | ATCNGC10|cyclic nucleotide gated channel 10 |
| CRO_T013063 | AT1G52540 (5.00E-93) | Protein kinase superfamily protein |
| CRO_T017577 | AT5G24310 (2.00E-51) | ABIL3|ABL interactor-like protein 3 |
| CRO_T018266 | - | - |
| CRO_T024268 | AT1G62510 (1.00E-20) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T027163 | AT1G64810 (2.00E-84) | APO1|ACCUMULATION OF PHOTOSYSTEM ONE 1 |
| CRO_T030513 | AT1G75520 (1.00E-53) | SRS5|SHI-related sequence 5 |
| CRO_T033381 | AT2G36770 (2.00E-41) | UDP-Glycosyltransferase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000615 | Carbon metabolism L-serine biosynthetic process L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolytic process Phenylpropanoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-tryptophan degradation VI (via tryptamine) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyridoxal phosphate binding adenosylhomocysteinase activity glucose-6-phosphate isomerase activity phosphoglycerate dehydrogenase activity aromatic-L-amino-acid decarboxylase activity phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphatidate cytidylyltransferase activity vomilenine glucosyltransferase activity tryptophan synthase activity raucaffricine beta-glucosidase activity S-adenosyl-L-methionine cycle II CDP-diacylglycerol biosynthesis II L-methionine degradation I (to L-homocysteine) strictosidine beta-glucosidase activity S-adenosylmethionine cycle starch metabolic process phosphatidylglycerol biosynthetic process glucosinolate catabolic process CDP-diacylglycerol biosynthetic process | details |
| TissueCFM000634 | translation preinitiation complex choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases N-acylphosphatidylethanolamine-specific phospholipase D activity phospholipase D activity phosphatidylcholine metabolic process eukaryotic translation initiation factor 3 complex extracellular space Lysosome carbohydrate transmembrane transport lipid catabolic process Glycerophospholipid metabolism cysteine-type endopeptidase activity RNA transport translational initiation proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000876 | alpha-Linolenic acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis calcium-dependent phospholipid binding Transcription_related, Transcription factor: bHLH response to abscisic acid methyltransferase activity | details |
| TissueCFM000994 | pyrazolylalanine synthase activity beta-pyrazolylalanine synthase activity L-mimosine synthase activity UDP-glycosyltransferase activity cysteine synthase activity cytokinin-O-glucosides biosynthesis L-cysteine biosynthesis I phospholipases cysteine biosynthetic process from serine cell morphogenesis cellular amino acid biosynthetic process Inositol phosphate metabolism Zeatin biosynthesis transferase activity, transferring hexosyl groups flavonoid biosynthetic process flavonoid glucuronidation hydrolase activity, acting on ester bonds formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001246 | Choline metabolism in cancer Stilbenoid, diarylheptanoid and gingerol biosynthesis indole-3-acetyl-amide conjugate biosynthesis syringetin biosynthesis phenylpropanoids methylation (ice plant) ammonium transmembrane transport organic cation transport nitrogen utilization 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity substrate-specific transmembrane transporter activity myricetin 3'-O-methyltransferase activity ammonium transmembrane transporter activity | details |
| TissueCFM001280 | Choline metabolism in cancer formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) Glycerolipid metabolism diacylglycerol and triacylglycerol biosynthesis substrate-specific transmembrane transporter activity O-acyltransferase activity lipid metabolic process protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TissueCFM001695 | endosome trans-Golgi network cytokinin-O-glucosides biosynthesis Other types of O-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc pectic galactan metabolic process single organismal cell-cell adhesion simple leaf morphogenesis sphingomyelin phosphodiesterase D activity glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity UDP-glycosyltransferase activity glycosaminoglycan biosynthetic process regulation of auxin mediated signaling pathway heparan sulfate proteoglycan biosynthetic process Zeatin biosynthesis cell morphogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation SCF ubiquitin ligase complex phloem or xylem histogenesis | details |
| TissueCFM001720 | Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 beta-pyrazolylalanine synthase activity arylformamidase activity L-mimosine synthase activity pyrazolylalanine synthase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity delta4-3-oxosteroid 5beta-reductase activity UDP-glycosyltransferase activity cytokinin-O-glucosides biosynthesis L-cysteine biosynthesis I tryptophan catabolic process to kynurenine 3-beta-hydroxy-delta5-steroid dehydrogenase activity cysteine synthase activity Zeatin biosynthesis cysteine biosynthetic process from serine transferase activity, transferring hexosyl groups coenzyme binding cellular amino acid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |