TissueCFM001695's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| endosome | 0.005919097 | GO:0005768 |
| trans-Golgi network | 0.005919097 | GO:0005802 |
| cytokinin-O-glucosides biosynthesis | 0.008478642 | plantCyc |
| Other types of O-glycan biosynthesis | 0.009561745 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.012135165 | cazy family |
| pectic galactan metabolic process | 0.012785171 | GO:0010401 |
| single organismal cell-cell adhesion | 0.012785171 | GO:0016337 |
| simple leaf morphogenesis | 0.012785171 | GO:0060776 |
| sphingomyelin phosphodiesterase D activity | 0.01384139 | GO:0050290 |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.01384139 | GO:0001888 |
| UDP-glycosyltransferase activity | 0.01384139 | GO:0008194 |
| glycosaminoglycan biosynthetic process | 0.019165293 | GO:0006024 |
| regulation of auxin mediated signaling pathway | 0.019165293 | GO:0010928 |
| heparan sulfate proteoglycan biosynthetic process | 0.019165293 | GO:0015012 |
| Zeatin biosynthesis | 0.021666633 | KEGG pathway |
| cell morphogenesis | 0.021896074 | GO:0000902 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.025927312 | GO:0050508 |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 0.02765173 | GO:0031146 |
| leaf vascular tissue pattern formation | 0.02765173 | GO:0010305 |
| SCF ubiquitin ligase complex | 0.032106771 | GO:0019005 |
| phloem or xylem histogenesis | 0.032522817 | GO:0010087 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002209 | AT2G27740 (3.00E-33) | Family of unknown function (DUF662) |
| CRO_T002561 | AT1G47890 (5.00E-104) | AtRLP7|receptor like protein 7 |
| CRO_T010920 | AT4G33160 (2.00E-22) | F-box family protein |
| CRO_T011126 | AT5G24580 (4.00E-14) | Heavy metal transport/detoxification superfamily protein |
| CRO_T019749 | AT3G55830 (9.00E-59) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T020836 | AT3G11590 (3.00E-135) | unknown protein |
| CRO_T022975 | AT2G25260 (9.00E-144) | unknown protein |
| CRO_T024091 | AT5G47400 (0) | unknown protein |
| CRO_T024354 | AT1G51540 (0) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T025193 | AT2G37630 (1.00E-71) | AS1|ASYMMETRIC LEAVES 1; ATMYB91|MYB DOMAIN PROTEIN 91; ATPHAN|ARABIDOPSIS PHANTASTICA-LIKE 1 |
| CRO_T032783 | AT3G19720 (1.00E-10) | ARC5|ACCUMULATION AND REPLICATION OF CHLOROPLAST 5; DRP5B|Dynamin related protein 5B |
| CRO_T033381 | AT2G36770 (2.00E-41) | UDP-Glycosyltransferase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000195 | pectic galactan metabolic process single organismal cell-cell adhesion heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc alkaloid metabolic process phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid | details |
| TissueCFM000678 | ATG1/ULK1 kinase complex cell plate | details |
| TissueCFM000823 | cytokinin-O-glucosides biosynthesis Transcription_related, Transcription factor: SRS Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase NF-kappa B signaling pathway Zeatin biosynthesis UDP-glycosyltransferase activity cellular developmental process embryo development root development organic substance metabolic process post-embryonic development potassium ion transmembrane transport regulation of membrane potential chaperone-mediated protein folding primary metabolic process cellular metabolic process FK506 binding voltage-gated potassium channel activity | details |
| TissueCFM000876 | alpha-Linolenic acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis calcium-dependent phospholipid binding Transcription_related, Transcription factor: bHLH response to abscisic acid methyltransferase activity | details |
| TissueCFM000994 | pyrazolylalanine synthase activity beta-pyrazolylalanine synthase activity L-mimosine synthase activity UDP-glycosyltransferase activity cysteine synthase activity cytokinin-O-glucosides biosynthesis L-cysteine biosynthesis I phospholipases cysteine biosynthetic process from serine cell morphogenesis cellular amino acid biosynthetic process Inositol phosphate metabolism Zeatin biosynthesis transferase activity, transferring hexosyl groups flavonoid biosynthetic process flavonoid glucuronidation hydrolase activity, acting on ester bonds formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001104 | glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity sphingomyelin phosphodiesterase D activity pectic galactan metabolic process single organismal cell-cell adhesion calcium ion transport formation of glycosidic bonds, GlycosylTransferases: GTnc heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity cation transmembrane transporter activity Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) cation transmembrane transport phloem or xylem histogenesis cellular transition metal ion homeostasis metal ion transport transition metal ion binding response to abscisic acid | details |
| TissueCFM001286 | integral component of membrane external side of plasma membrane Cytochrome_P450, Cytochrome P450: CYP94B Transcription_related, Transcription regulator: LIM Glycerolipid metabolism sphingomyelin phosphodiesterase D activity fatty acid transporter activity fatty acid transport stem vascular tissue pattern formation cutin transport | details |
| TissueCFM001419 | Cytochrome_P450, Cytochrome P450: CYP711 regulation of meristem structural organization leaf formation secondary shoot formation auxin polar transport aromatase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001522 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding response to abscisic acid | details |
| TissueCFM001606 | IMP salvage AMP deaminase activity adenosine nucleotides degradation I integral component of mitochondrial outer membrane protein histidine kinase binding Purine metabolism response to abscisic acid embryo development ending in seed dormancy | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
| TissueCFM001720 | Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 beta-pyrazolylalanine synthase activity arylformamidase activity L-mimosine synthase activity pyrazolylalanine synthase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity delta4-3-oxosteroid 5beta-reductase activity UDP-glycosyltransferase activity cytokinin-O-glucosides biosynthesis L-cysteine biosynthesis I tryptophan catabolic process to kynurenine 3-beta-hydroxy-delta5-steroid dehydrogenase activity cysteine synthase activity Zeatin biosynthesis cysteine biosynthetic process from serine transferase activity, transferring hexosyl groups coenzyme binding cellular amino acid biosynthetic process | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001832 | γ-glutamyl cycle UDP-L-arabinose biosynthesis I (from UDP-xylose) kinase activity receptor serine/threonine kinase binding UDP-glucose 4-epimerase activity UDP-sugars interconversion simple leaf morphogenesis meristem development regulation of auxin mediated signaling pathway SCF ubiquitin ligase complex galactose metabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Amino sugar and nucleotide sugar metabolism 2-alkenal reductase [NAD(P)] activity ubiquitin-protein transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |