TissueCFM000845's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glycolytic process | 4.57E-09 | GO:0006096 |
| glycolysis IV (plant cytosol) | 1.57E-08 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 1.62E-08 | plantCyc |
| Rubisco shunt | 8.89E-07 | plantCyc |
| Carbon metabolism | 1.33E-06 | KEGG pathway |
| pyruvate kinase activity | 8.52E-05 | GO:0004743 |
| magnesium ion binding | 8.52E-05 | GO:0000287 |
| potassium ion binding | 8.52E-05 | GO:0030955 |
| gluconeogenesis I | 0.000446209 | plantCyc |
| phosphopyruvate hydratase activity | 0.007138548 | GO:0004634 |
| Transcription_related, Transcription factor: G2-like | 0.008742953 | TF family |
| kinase activity | 0.008977328 | GO:0016301 |
| fructose-bisphosphate aldolase activity | 0.009513846 | GO:0004332 |
| phosphopyruvate hydratase complex | 0.011129984 | GO:0000015 |
| tRNA modification | 0.022913067 | GO:0006400 |
| trichome morphogenesis | 0.022913067 | GO:0010090 |
| response to cytokinin | 0.022913067 | GO:0009735 |
| Calvin-Benson-Bassham cycle | 0.027734195 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.027734195 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005593 | AT2G26695 (3.00E-05) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T006297 | AT5G06800 (1.00E-20) | myb-like HTH transcriptional regulator family protein |
| CRO_T008480 | AT1G74030 (0) | ENO1|enolase 1 |
| CRO_T008682 | AT4G19645 (3.00E-108) | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| CRO_T010223 | AT1G78010 (3.00E-144) | tRNA modification GTPase, putative |
| CRO_T016255 | - | - |
| CRO_T024679 | - | - |
| CRO_T025149 | AT2G36580 (0) | Pyruvate kinase family protein |
| CRO_T025972 | AT3G04050 (0) | Pyruvate kinase family protein |
| CRO_T026246 | AT2G01140 (0) | FBA3|fructose-bisphosphate aldolase 3; PDE345|PIGMENT DEFECTIVE 345 |
| CRO_T031745 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000615 | Carbon metabolism L-serine biosynthetic process L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolytic process Phenylpropanoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-tryptophan degradation VI (via tryptamine) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyridoxal phosphate binding adenosylhomocysteinase activity glucose-6-phosphate isomerase activity phosphoglycerate dehydrogenase activity aromatic-L-amino-acid decarboxylase activity phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphatidate cytidylyltransferase activity vomilenine glucosyltransferase activity tryptophan synthase activity raucaffricine beta-glucosidase activity S-adenosyl-L-methionine cycle II CDP-diacylglycerol biosynthesis II L-methionine degradation I (to L-homocysteine) strictosidine beta-glucosidase activity S-adenosylmethionine cycle starch metabolic process phosphatidylglycerol biosynthetic process glucosinolate catabolic process CDP-diacylglycerol biosynthetic process | details |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000841 | Carbon metabolism folic acid binding O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthesis tryptophan synthase activity tryptophan biosynthetic process L-serine biosynthetic process magnesium ion transmembrane transport magnesium ion transport RNA modification cellular amino acid biosynthetic process tRNA modification potassium ion binding pyruvate kinase activity magnesium ion transmembrane transporter activity glycolytic process glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
| TissueCFM000844 | 2-Oxocarboxylic acid metabolism L-valine biosynthesis branched-chain amino acid biosynthetic process acetolactate synthase activity N-acetyltransferase activity cellular amino acid biosynthetic process amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: F-box chloroplast stroma | details |
| TissueCFM000865 | glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) glycolytic process Carbon metabolism cofactor metabolic process tetrapyrrole metabolic process cellular nitrogen compound metabolic process RNA metabolic process pyruvate kinase activity potassium ion binding fructose-bisphosphate aldolase activity Calvin-Benson-Bassham cycle Rubisco shunt sucrose biosynthesis I (from photosynthesis) gluconeogenesis I | details |
| TissueCFM000928 | molybdenum ion binding pyridoxal phosphate binding protein N-linked glycosylation sucrose metabolic process catalytic activity sucrose-phosphate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like sucrose synthase activity oligosaccharyltransferase complex sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II N-Glycan biosynthesis Starch and sucrose metabolism | details |
| TissueCFM001394 | Proteasome proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: Trihelix oxidation-reduction process regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion snRNA transcription calcium-mediated signaling proteasome assembly regulation of photomorphogenesis positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Rab GDP-dissociation inhibitor activity polyubiquitin binding maturation of LSU-rRNA glucose metabolic process L-ascorbate peroxidase activity nuclear proteasome complex cytosolic proteasome complex ER-associated ubiquitin-dependent protein catabolic process ascorbate glutathione cycle L-ascorbate degradation V | details |
| TissueCFM001535 | oligosaccharyltransferase complex Cytochrome_P450, Cytochrome P450: CYP88A Transcription_related, Transcription factor: G2-like branched-chain amino acid biosynthetic process protein N-linked glycosylation 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis N-Glycan biosynthesis ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) flavonol biosynthesis GA12 biosynthesis L-valine biosynthesis syringetin biosynthesis tRNA modification negative regulation of catalytic activity acetolactate synthase activity | details |
| TissueCFM001696 | Carbon metabolism phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphopyruvate hydratase complex tryptophan synthase activity L-serine biosynthetic process tRNA modification trichome morphogenesis glycolytic process tryptophan biosynthetic process cellular amino acid biosynthetic process response to cytokinin L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
| TissueCFM001762 | ER-associated ubiquitin-dependent protein catabolic process retrograde protein transport, ER to cytosol glucose catabolic process positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly nuclear proteasome complex cytosolic proteasome complex endoplasmic reticulum lumen phosphoglycerate mutase activity folic acid binding proteasome regulatory particle, base subcomplex proteasome-activating ATPase activity TBP-class protein binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process manganese ion binding response to salt stress helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |