TissueCFM001535's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oligosaccharyltransferase complex | 0.004962045 | GO:0008250 |
| Cytochrome_P450, Cytochrome P450: CYP88A | 0.004962045 | CYP450 family |
| Transcription_related, Transcription factor: G2-like | 0.008359358 | TF family |
| branched-chain amino acid biosynthetic process | 0.014157482 | GO:0009082 |
| protein N-linked glycosylation | 0.014157482 | GO:0006487 |
| 2-Oxocarboxylic acid metabolism | 0.019633618 | KEGG pathway |
| Diterpenoid biosynthesis | 0.019633618 | KEGG pathway |
| N-Glycan biosynthesis | 0.019633618 | KEGG pathway |
| ethylene biosynthesis I (plants) | 0.020204288 | plantCyc |
| flavonoid biosynthesis (in equisetum) | 0.020204288 | plantCyc |
| flavonol biosynthesis | 0.020204288 | plantCyc |
| GA12 biosynthesis | 0.020204288 | plantCyc |
| L-valine biosynthesis | 0.020204288 | plantCyc |
| syringetin biosynthesis | 0.020204288 | plantCyc |
| tRNA modification | 0.020424331 | GO:0006400 |
| negative regulation of catalytic activity | 0.025295879 | GO:0043086 |
| acetolactate synthase activity | 0.027481819 | GO:0003984 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006297 | AT5G06800 (1.00E-20) | myb-like HTH transcriptional regulator family protein |
| CRO_T009799 | AT5G16290 (8.00E-22) | VAT1|VALINE-TOLERANT 1 |
| CRO_T010223 | AT1G78010 (3.00E-144) | tRNA modification GTPase, putative |
| CRO_T019341 | AT4G00080 (1.00E-21) | UNE11|unfertilized embryo sac 11 |
| CRO_T027408 | AT4G21150 (1.00E-174) | HAP6|HAPLESS 6; RPN2|RIBOPHORIN II |
| CRO_T032125 | AT4G10490 (2.00E-57) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T033773 | AT5G45340 (2.00E-62) | CYP707A3|cytochrome P450, family 707, subfamily A, polypeptide 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM000841 | Carbon metabolism folic acid binding O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthesis tryptophan synthase activity tryptophan biosynthetic process L-serine biosynthetic process magnesium ion transmembrane transport magnesium ion transport RNA modification cellular amino acid biosynthetic process tRNA modification potassium ion binding pyruvate kinase activity magnesium ion transmembrane transporter activity glycolytic process glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
| TissueCFM000844 | 2-Oxocarboxylic acid metabolism L-valine biosynthesis branched-chain amino acid biosynthetic process acetolactate synthase activity N-acetyltransferase activity cellular amino acid biosynthetic process amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: F-box chloroplast stroma | details |
| TissueCFM000845 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Rubisco shunt Carbon metabolism pyruvate kinase activity magnesium ion binding potassium ion binding gluconeogenesis I phosphopyruvate hydratase activity Transcription_related, Transcription factor: G2-like kinase activity fructose-bisphosphate aldolase activity phosphopyruvate hydratase complex tRNA modification trichome morphogenesis response to cytokinin Calvin-Benson-Bassham cycle sucrose biosynthesis I (from photosynthesis) | details |
| TissueCFM000928 | molybdenum ion binding pyridoxal phosphate binding protein N-linked glycosylation sucrose metabolic process catalytic activity sucrose-phosphate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like sucrose synthase activity oligosaccharyltransferase complex sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II N-Glycan biosynthesis Starch and sucrose metabolism | details |
| TissueCFM000984 | oxidation-reduction process chromoplast carotenoid biosynthetic process Carotenoid biosynthesis trans-lycopene biosynthesis II (plants) ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) Fluorobenzoate degradation Propanoate metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: AP2 pollen tube guidance regulation of pollen tube growth 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene ion channel activity 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity alpha-amylase activity carotene 7,8-desaturase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity protein-disulfide reductase activity neurosporene biosynthesis pollen tube growth 2-oxoisovalerate decarboxylation to isobutanoyl-CoA pinobanksin biosynthesis leucodelphinidin biosynthesis Flavonoid biosynthesis flavonol biosynthesis syringetin biosynthesis ion transmembrane transport | details |
| TissueCFM001426 | formation of glycosidic bonds, GlycosylTransferases: GTnc acylglycerol lipase activity phospholipase activity pheophorbide a oxygenase activity sucrose-phosphate synthase activity chlorophyllide a oxygenase [overall] activity RNA polymerase I transcription factor complex sucrose synthase activity cell death protein N-linked glycosylation fruit development sucrose metabolic process defense response to bacterium, incompatible interaction chlorophyll catabolic process oligosaccharyltransferase complex chlorophyll a degradation II phospholipid remodeling (phosphatidylcholine, yeast) sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II phosphatidylcholine acyl editing phospholipases flower development lipid catabolic process N-Glycan biosynthesis Porphyrin and chlorophyll metabolism 2 iron, 2 sulfur cluster binding | details |
| TissueCFM001492 | [myelin basic protein]-arginine N-methyltransferase activity 3'-5'-exodeoxyribonuclease activity protein-arginine omega-N monomethyltransferase activity nucleotide-excision repair, DNA gap filling DNA replication proofreading base-excision repair, gap-filling delta DNA polymerase complex oligosaccharyltransferase complex protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine histone arginine methylation FoxO signaling pathway protein N-linked glycosylation DNA-directed DNA polymerase activity DNA binding DNA recombination DNA biosynthetic process vegetative to reproductive phase transition of meristem DNA replication N-Glycan biosynthesis DNA repair nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001688 | ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) pheophorbide a oxygenase activity metal ion binding oxidation-reduction process cell death fruit development defense response to bacterium, incompatible interaction chlorophyll catabolic process chlorophyllide a oxygenase [overall] activity Porphyrin and chlorophyll metabolism flower development chlorophyll a degradation II Transcription_related, Transcription factor: MYB pinobanksin biosynthesis Flavonoid biosynthesis flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis 2 iron, 2 sulfur cluster binding chloroplast thylakoid chloroplast inner membrane | details |
| TissueCFM001696 | Carbon metabolism phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphopyruvate hydratase complex tryptophan synthase activity L-serine biosynthetic process tRNA modification trichome morphogenesis glycolytic process tryptophan biosynthetic process cellular amino acid biosynthetic process response to cytokinin L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |