TissueCFM000869's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oxalate-CoA ligase activity | 0.001950499 | GO:0050203 |
| positive regulation of seed germination | 0.003218323 | GO:0010030 |
| oxalate catabolic process | 0.003218323 | GO:0033611 |
| 4-coumarate-CoA ligase activity | 0.003412112 | GO:0016207 |
| seed coat development | 0.005362682 | GO:0010214 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.013051924 | cazy family |
| defense response to fungus | 0.019278573 | GO:0050832 |
| S-adenosylmethionine-dependent methyltransferase activity | 0.020388144 | GO:0008757 |
| response to cytokinin | 0.021832913 | GO:0009735 |
| cutin biosynthesis | 0.027358336 | plantCyc |
| long-chain fatty acid activation | 0.027358336 | plantCyc |
| oleate biosynthesis I (plants) | 0.027358336 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.027358336 | plantCyc |
| phosphatidylcholine acyl editing | 0.027358336 | plantCyc |
| sporopollenin precursors biosynthesis | 0.027358336 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.027358336 | plantCyc |
| suberin monomers biosynthesis | 0.027358336 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005196 | AT3G48990 (0) | AAE3|ACYL-ACTIVATING ENZYME 3 |
| CRO_T005340 | AT1G27200 (7.00E-163) | Domain of unknown function (DUF23) |
| CRO_T014464 | AT1G13170 (0) | ORP1D|OSBP(oxysterol binding protein)-related protein 1D |
| CRO_T022136 | AT3G24560 (4.00E-82) | RSY3|RASPBERRY 3 |
| CRO_T023838 | AT3G51790 (1.00E-75) | AtCCME|A. thaliana homolog of E. coli CcmE; ATG1|transmembrane protein G1P-related 1 |
| CRO_T032023 | AT2G41380 (2.00E-91) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000742 | phosphatidate metabolism, as a signaling molecule phytosphingosine metabolic process transmembrane receptor protein kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Plant-pathogen interaction response to cold S-adenosylmethionine-dependent methyltransferase activity | details |
| TissueCFM000960 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Biotin metabolism Longevity regulating pathway - worm dethiobiotin synthase activity oxalate-CoA ligase activity hydrolase activity, hydrolyzing O-glycosyl compounds adenosylmethionine-8-amino-7-oxononanoate transaminase activity signaling receptor activity oxalate catabolic process positive regulation of seed germination detection of light stimulus 4-coumarate-CoA ligase activity biotin biosynthetic process seed coat development carbohydrate metabolic process cellular protein modification process protein channel activity mitochondrial inner membrane presequence translocase complex integral component of mitochondrial inner membrane cytoskeleton protein import into mitochondrial matrix Transcription_related, Transcription regulator: PHD defense response to fungus | details |
| TissueCFM001316 | spindle microtubule cytoskeleton HAUS complex detection of light stimulus signaling receptor activity cellular protein modification process spindle assembly microtubule minus-end binding Plant-pathogen interaction adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD | details |
| TissueCFM001463 | Transcriptional misregulation in cancers oxalate catabolic process positive regulation of seed germination protein targeting glucose catabolic process seed coat development oxalate-CoA ligase activity 4-coumarate-CoA ligase activity defense response to fungus response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001841 | UDP-D-xylose biosynthesis vacuolar membrane regulation of plant-type hypersensitive response interstrand cross-link repair hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides UDP-glucuronate decarboxylase activity nuclease activity proteasome core complex threonine-type endopeptidase activity Fanconi anemia pathway Proteasome Amino sugar and nucleotide sugar metabolism nucleic acid phosphodiester bond hydrolysis proteolysis involved in cellular protein catabolic process S-adenosylmethionine-dependent methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |