TissueCFM001463's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcriptional misregulation in cancers | 0.003099354 | KEGG pathway |
| oxalate catabolic process | 0.004496573 | GO:0033611 |
| positive regulation of seed germination | 0.004496573 | GO:0010030 |
| protein targeting | 0.004496573 | GO:0006605 |
| glucose catabolic process | 0.004496573 | GO:0006007 |
| seed coat development | 0.004496573 | GO:0010214 |
| oxalate-CoA ligase activity | 0.004723347 | GO:0050203 |
| 4-coumarate-CoA ligase activity | 0.008262193 | GO:0016207 |
| defense response to fungus | 0.017956018 | GO:0050832 |
| response to cytokinin | 0.021784416 | GO:0009735 |
| cutin biosynthesis | 0.031890741 | plantCyc |
| long-chain fatty acid activation | 0.031890741 | plantCyc |
| oleate biosynthesis I (plants) | 0.031890741 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.031890741 | plantCyc |
| phosphatidylcholine acyl editing | 0.031890741 | plantCyc |
| sporopollenin precursors biosynthesis | 0.031890741 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.031890741 | plantCyc |
| suberin monomers biosynthesis | 0.031890741 | plantCyc |
| protein heterodimerization activity | 0.044578439 | GO:0046982 |
| 2-alkenal reductase [NAD(P)] activity | 0.044578439 | GO:0032440 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005196 | AT3G48990 (0) | AAE3|ACYL-ACTIVATING ENZYME 3 |
| CRO_T006414 | AT5G09570 (1.00E-32) | Cox19-like CHCH family protein |
| CRO_T009688 | AT2G37110 (5.00E-86) | PLAC8 family protein |
| CRO_T014558 | AT4G40030 (1.00E-74) | H3.3|histone 3.3 |
| CRO_T016401 | AT1G07310 (2.00E-24) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T022919 | - | - |
| CRO_T032105 | AT3G48890 (2.00E-66) | ATMAPR3|MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3; MSBP2|MEMBRANE STEROID BINDING PROTEIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000091 | Ubiquitin_Proteasome_system, E3 adaptor: DWD mitochondrial respiratory chain complex IV assembly glucose catabolic process protein targeting mitochondrial respiratory chain complex I assembly glucan 1,3-alpha-glucosidase activity DNA replication factor A complex protein import into mitochondrial matrix Prp19 complex mitochondrial inner membrane presequence translocase complex Cul4-RING E3 ubiquitin ligase complex Transcriptional misregulation in cancers precatalytic spliceosome catalytic step 2 spliceosome nucleosome N-Glycan biosynthesis mRNA splicing, via spliceosome | details |
| TissueCFM000188 | details | |
| TissueCFM000367 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit clathrin-mediated endocytosis clathrin heavy chain binding structural molecule activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000501 | glucose catabolic process protein targeting Transcriptional misregulation in cancers N-terminal protein amino acid acetylation peptide alpha-N-acetyltransferase activity protein heterodimerization activity nucleosome protein acetyltransferase complex thylakoid | details |
| TissueCFM000803 | protein phosphorylation protein kinase activity ATP binding integral component of membrane Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription regulator: MBF1 microtubule minus-end binding transmembrane receptor protein tyrosine kinase activity protein serine/threonine kinase activity | details |
| TissueCFM000869 | oxalate-CoA ligase activity positive regulation of seed germination oxalate catabolic process 4-coumarate-CoA ligase activity seed coat development formation of glycosidic bonds, GlycosylTransferases: GTnc defense response to fungus S-adenosylmethionine-dependent methyltransferase activity response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TissueCFM000952 | endosome trans-Golgi network 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc fructokinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity ribokinase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity pectin biosynthetic process folic acid-containing compound biosynthetic process D-ribose metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I homogalacturonan biosynthesis sucrose degradation III (sucrose invertase) tetrahydrofolate biosynthesis II xylogalacturonan biosynthesis carbohydrate phosphorylation Folate biosynthesis Fructose and mannose metabolism secologanin and strictosidine biosynthesis | details |
| TissueCFM000960 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Biotin metabolism Longevity regulating pathway - worm dethiobiotin synthase activity oxalate-CoA ligase activity hydrolase activity, hydrolyzing O-glycosyl compounds adenosylmethionine-8-amino-7-oxononanoate transaminase activity signaling receptor activity oxalate catabolic process positive regulation of seed germination detection of light stimulus 4-coumarate-CoA ligase activity biotin biosynthetic process seed coat development carbohydrate metabolic process cellular protein modification process protein channel activity mitochondrial inner membrane presequence translocase complex integral component of mitochondrial inner membrane cytoskeleton protein import into mitochondrial matrix Transcription_related, Transcription regulator: PHD defense response to fungus | details |
| TissueCFM001538 | Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin heavy chain binding UDP-arabinopyranose mutase activity sequence-specific DNA binding clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit transcription factor activity, sequence-specific DNA binding UDP-L-arabinose metabolic process plant-type cell wall biogenesis clathrin-mediated endocytosis Amino sugar and nucleotide sugar metabolism structural molecule activity ribosome binding regulation of transcription, DNA-templated cellulose biosynthetic process | details |
| TissueCFM001615 | Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI cortical cytoskeleton organization glucose catabolic process protein targeting Transcriptional misregulation in cancers microtubule cytoskeleton organization spindle nuclear chromatin nucleosome mRNA surveillance pathway protein dephosphorylation | details |
| TissueCFM001642 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication meiotic nuclear division response to nematode detection of light stimulus glucose catabolic process protein targeting mitotic spindle assembly growth cortical microtubule organization microtubule minus-end binding signaling receptor activity gamma-tubulin binding intracellular transport cellular protein modification process Transcriptional misregulation in cancers Lysosome equatorial microtubule organizing center gamma-tubulin complex structural constituent of cytoskeleton membrane coat nucleosome protein heterodimerization activity protein transport | details |
| TissueCFM001648 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc ajugose biosynthesis II (galactinol-independent) RNA phosphodiester bond hydrolysis, exonucleolytic polysaccharide catabolic process nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay glycolytic process pyruvate kinase activity 3'-5'-exoribonuclease activity potassium ion binding CCR4-NOT complex glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Plant-pathogen interaction RNA degradation | details |
Expression profiles
 Show details about module gene expression profiling |