TissueCFM001841's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-D-xylose biosynthesis | 0.002126245 | plantCyc |
| vacuolar membrane | 0.00241648 | GO:0005774 |
| regulation of plant-type hypersensitive response | 0.004048164 | GO:0010363 |
| interstrand cross-link repair | 0.004048164 | GO:0036297 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.006436646 | GO:0016818 |
| UDP-glucuronate decarboxylase activity | 0.008044024 | GO:0048040 |
| nuclease activity | 0.012863783 | GO:0004518 |
| proteasome core complex | 0.014326635 | GO:0005839 |
| threonine-type endopeptidase activity | 0.015267843 | GO:0004298 |
| Fanconi anemia pathway | 0.022357933 | KEGG pathway |
| Proteasome | 0.022357933 | KEGG pathway |
| Amino sugar and nucleotide sugar metabolism | 0.026178498 | KEGG pathway |
| nucleic acid phosphodiester bond hydrolysis | 0.032242071 | GO:0090305 |
| proteolysis involved in cellular protein catabolic process | 0.032242071 | GO:0051603 |
| S-adenosylmethionine-dependent methyltransferase activity | 0.040368525 | GO:0008757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003539 | AT1G08200 (1.00E-27) | AXS2|UDP-D-apiose/UDP-D-xylose synthase 2 |
| CRO_T016326 | AT1G48360 (2.00E-66) | zinc ion binding; nucleic acid binding; hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides |
| CRO_T020351 | AT3G19770 (1.00E-69) | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
| CRO_T021488 | AT5G40580 (5.00E-21) | PBB2|20S proteasome beta subunit PBB2 |
| CRO_T021715 | AT1G48175 (2.00E-16) | emb2191|embryo defective 2191; TAD1|tRNA adenosine deaminase 1 |
| CRO_T032023 | AT2G41380 (2.00E-91) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000124 | NF-kappa B signaling pathway Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyruvate fermentation to lactate vindoline and vinblastine biosynthesis | details |
| TissueCFM000188 | details | |
| TissueCFM000372 | UDP-D-xylose biosynthesis RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity UDP-glucuronate decarboxylase activity CCR4-NOT complex Amino sugar and nucleotide sugar metabolism RNA degradation | details |
| TissueCFM000742 | phosphatidate metabolism, as a signaling molecule phytosphingosine metabolic process transmembrane receptor protein kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Plant-pathogen interaction response to cold S-adenosylmethionine-dependent methyltransferase activity | details |
| TissueCFM000869 | oxalate-CoA ligase activity positive regulation of seed germination oxalate catabolic process 4-coumarate-CoA ligase activity seed coat development formation of glycosidic bonds, GlycosylTransferases: GTnc defense response to fungus S-adenosylmethionine-dependent methyltransferase activity response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TissueCFM001133 | ubiquitin-dependent protein catabolic process mitochondrial envelope mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) proteasome core complex, alpha-subunit complex protein localization to organelle interstrand cross-link repair nucleocytoplasmic transport protein transmembrane transport 1,3-beta-D-glucan synthase complex Oxidative phosphorylation hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1,3-β-D-glucan biosynthesis apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis unsaturated, even numbered fatty acid β-oxidation Transcription_related, Transcription regulator: SET Ubiquitin_Proteasome_system, DUB: USP (1->3)-beta-D-glucan biosynthetic process Fanconi anemia pathway nuclease activity 1,3-beta-D-glucan synthase activity thiol-dependent ubiquitin-specific protease activity protein channel activity threonine-type endopeptidase activity hydrogen ion transmembrane transporter activity fatty acid β-oxidation II (peroxisome) sesaminol glucoside biosynthesis curcumin glucoside biosynthesis Proteasome cytochrome-c oxidase activity | details |
| TissueCFM001164 | Transcription_related, Transcription regulator: MBF1 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: USP 1,3-beta-D-glucan synthase complex cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides regulation of nucleic acid-templated transcription interstrand cross-link repair positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process thiol-dependent ubiquitin-specific protease activity nuclease activity 1,3-beta-D-glucan synthase activity proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding (1->3)-beta-D-glucan biosynthetic process protein deubiquitination ER-associated ubiquitin-dependent protein catabolic process Fanconi anemia pathway Proteasome nucleic acid phosphodiester bond hydrolysis response to stress ubiquitin-dependent protein catabolic process unfolded protein binding | details |
| TissueCFM001281 | Cytochrome_P450, Cytochrome P450: CYP701A ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-ol oxidase activity pantothenate kinase activity fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) phosphopantothenate biosynthesis I unsaturated, even numbered fatty acid β-oxidation GA12 biosynthesis regulation of plant-type hypersensitive response ent-kaurene oxidation to kaurenoic acid coenzyme A biosynthetic process gibberellin biosynthetic process photorespiration Pantothenate and CoA biosynthesis threonine-type endopeptidase activity cytochrome-c oxidase activity Diterpenoid biosynthesis chloroplast outer membrane proteasome core complex Proteasome | details |
| TissueCFM001471 | photosynthesis light reactions Sulfur metabolism carbohydrate transport plant-type vacuole membrane respiratory chain substrate-specific transmembrane transporter activity | details |
| TissueCFM001710 | ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: USP protein deubiquitination interstrand cross-link repair 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Fanconi anemia pathway Proteasome thiol-dependent ubiquitin-specific protease activity nuclease activity thiol-dependent ubiquitinyl hydrolase activity 1,3-beta-D-glucan synthase activity 1,3-beta-D-glucan synthase complex proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |