TissueCFM000893's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: RING | 0.00185961 | ubs family |
| delta14-sterol reductase activity | 0.00608174 | GO:0050613 |
| Mitophagy - yeast | 0.006201457 | KEGG pathway |
| plant sterol biosynthesis | 0.006396253 | plantCyc |
| sterol biosynthetic process | 0.009097083 | GO:0016126 |
| Steroid biosynthesis | 0.011136923 | KEGG pathway |
| integral component of endoplasmic reticulum membrane | 0.011369337 | GO:0030176 |
| microtubule-severing ATPase activity | 0.033390309 | GO:0008568 |
| metalloendopeptidase activity | 0.042421483 | GO:0004222 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003456 | AT3G52940 (3.00E-59) | ELL1|EXTRA-LONG-LIFESPAN 1; FK|FACKEL |
| CRO_T004303 | AT5G66160 (4.00E-16) | ATRMR1|RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1 |
| CRO_T007929 | - | - |
| CRO_T012795 | AT2G26920 (2.00E-120) | Ubiquitin-associated/translation elongation factor EF1B protein |
| CRO_T026183 | AT5G23950 (1.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T026588 | AT5G24870 (2.00E-20) | RING/U-box superfamily protein |
| CRO_T033282 | AT2G26140 (1.00E-174) | ftsh4|FTSH protease 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000387 | Ubiquitin_Proteasome_system, E3: RING Mitophagy - yeast mitochondrial part large ribosomal subunit | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001467 | Arp2/3 protein complex GPI-anchor transamidase complex trichome morphogenesis Arp2/3 complex-mediated actin nucleation attachment of GPI anchor to protein multidimensional cell growth CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Autophagy - yeast Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Glycerolipid metabolism | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
| TissueCFM001609 | G-quadruplex DNA unwinding negative regulation of telomere maintenance via telomerase mitochondrial genome maintenance negative regulation of telomerase activity replication fork telomerase inhibitor activity ATP-dependent 5'-3' DNA helicase activity cellular response to DNA damage stimulus jasmonic acid biosynthesis Transcription_related, Transcription factor: WRKY DNA duplex unwinding DNA replication | details |
| TissueCFM001668 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: ERF metal ion binding | details |
Expression profiles
 Show details about module gene expression profiling |