TissueCFM001668's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| multivesicular body assembly | 1.31E-06 | GO:0036258 |
| intralumenal vesicle formation | 1.64E-06 | GO:0070676 |
| late endosome membrane | 4.32E-06 | GO:0031902 |
| ubiquitin binding | 1.97E-05 | GO:0043130 |
| transcription factor activity, sequence-specific DNA binding | 0.004972958 | GO:0003700 |
| regulation of transcription, DNA-templated | 0.009041516 | GO:0006355 |
| Transcription_related, Transcription factor: bZIP | 0.021218509 | TF family |
| Transcription_related, Transcription factor: ERF | 0.024832496 | TF family |
| metal ion binding | 0.025518867 | GO:0046872 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003332 | AT2G35530 (1.00E-46) | bZIP16|basic region/leucine zipper transcription factor 16 |
| CRO_T007929 | - | - |
| CRO_T011401 | AT5G44210 (3.00E-19) | ATERF-9|ERF DOMAIN PROTEIN- 9; ATERF9|ERF DOMAIN PROTEIN 9 |
| CRO_T015570 | AT5G64480 (3.00E-18) | unknown protein |
| CRO_T018993 | - | - |
| CRO_T023079 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000591 | peroxisomal importomer complex integral component of peroxisomal membrane protein C-terminus binding protein monoubiquitination embryonic morphogenesis protein import into peroxisome matrix fatty acid beta-oxidation Peroxisome Transcription_related, Transcription factor: ERF | details |
| TissueCFM000893 | Ubiquitin_Proteasome_system, E3: RING delta14-sterol reductase activity Mitophagy - yeast plant sterol biosynthesis sterol biosynthetic process Steroid biosynthesis integral component of endoplasmic reticulum membrane microtubule-severing ATPase activity metalloendopeptidase activity | details |
| TissueCFM001201 | Ubiquitin_Proteasome_system, E3: HECT intralumenal vesicle formation phospholipid catabolic process multivesicular body assembly nucleotide-sugar metabolic process dTDP-glucose 4,6-dehydratase activity UDP-glucose 4,6-dehydratase activity UDP-L-rhamnose biosynthesis phospholipase activity O-acyltransferase activity ubiquitin binding late endosome membrane phosphatidylcholine acyl editing phospholipases protein ubiquitination involved in ubiquitin-dependent protein catabolic process Amino sugar and nucleotide sugar metabolism Ubiquitin mediated proteolysis | details |
| TissueCFM001237 | L-tryptophan biosynthesis phosphate acquisition phosphoribosylanthranilate isomerase activity Transcription_related, Transcription factor: ERF tryptophan biosynthetic process acid phosphatase activity microtubule-severing ATPase activity | details |
| TissueCFM001293 | multivesicular body assembly intralumenal vesicle formation ubiquitin binding late endosome membrane magnoflorine biosynthesis P-P-bond-hydrolysis-driven protein transmembrane transporter activity protein binding involved in protein folding chloroplast envelope cell death lipid biosynthetic process de-etiolation protein transmembrane transport protein metabolic process protein histidine kinase binding chaperone-mediated protein folding chloroplast outer membrane chloroplast organization metal ion binding S-adenosylmethionine-dependent methyltransferase activity | details |
| TissueCFM001358 | homogalacturonan degradation eukaryotic translation initiation factor 3 complex, eIF3m mRNA cleavage factor complex mRNA polyadenylation pollen germination innate immune response | details |
| TissueCFM001739 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity protein metabolic process riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP protein histidine kinase binding metal ion binding | details |
| TissueCFM001745 | riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) L-lysine biosynthesis VI L,L-diaminopimelate aminotransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity systemic acquired resistance, salicylic acid mediated signaling pathway lysine biosynthetic process via diaminopimelate riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: WRKY Riboflavin metabolism response to cytokinin | details |
Expression profiles
 Show details about module gene expression profiling |