TissueCFM001537's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 4-hydroxyphenylpyruvate biosynthesis | 0.003036347 | plantCyc |
| superpathway of plastoquinol biosynthesis | 0.003036347 | plantCyc |
| GPI-anchor transamidase complex | 0.003722304 | GO:0042765 |
| rosmarinic acid biosynthesis I | 0.004047566 | plantCyc |
| L-tyrosine:2-oxoglutarate aminotransferase activity | 0.005059831 | GO:0004838 |
| GPI-anchor transamidase activity | 0.005059831 | GO:0003923 |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.006068658 | plantCyc |
| cytosol | 0.006519727 | GO:0005829 |
| attachment of GPI anchor to protein | 0.006824224 | GO:0016255 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.006875272 | plantCyc |
| cellular amino acid metabolic process | 0.009253238 | GO:0006520 |
| biosynthetic process | 0.014582338 | GO:0009058 |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.024339834 | KEGG pathway |
| Biosynthesis of amino acids | 0.045526243 | KEGG pathway |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007772 | AT3G19350 (3.00E-16) | MPC|maternally expressed pab C-terminal |
| CRO_T009529 | AT3G07140 (0) | GPI transamidase component Gpi16 subunit family protein |
| CRO_T018397 | AT1G16840 (1.00E-12) | unknown protein |
| CRO_T020734 | - | - |
| CRO_T025669 | AT5G53970 (1.00E-112) | TAT7|tyrosine aminotransferase 7 |
| CRO_T026183 | AT5G23950 (1.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000390 | Ubiquitin_Proteasome_system, E3 adaptor: F-box geranyl acetate biosynthesis ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) DNA topological change Ubiquitin_Proteasome_system, E2: UBC vesicle fusion exocytosis DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity chromosome SNARE complex RNA transport Ubiquitin mediated proteolysis | details |
| TissueCFM000391 | Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA splicing DNA-templated transcription, initiation single organism reproductive process single-multicellular organism process RNA transport | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000837 | sesaminol glucoside biosynthesis Transcription_related, Transcription regulator: mTERF transferase activity, transferring hexosyl groups coenzyme binding Plant hormone signal transduction RNA transport | details |
| TissueCFM000893 | Ubiquitin_Proteasome_system, E3: RING delta14-sterol reductase activity Mitophagy - yeast plant sterol biosynthesis sterol biosynthetic process Steroid biosynthesis integral component of endoplasmic reticulum membrane microtubule-severing ATPase activity metalloendopeptidase activity | details |
| TissueCFM001013 | Transcription_related, Transcription factor: TCP regulation of leaf development secondary shoot formation RNA modification isomerase activity vacuolar membrane plant-type cell wall apoplast Ribosome serine-type endopeptidase activity | details |
| TissueCFM001148 | Ubiquitin_Proteasome_system, E3 adaptor: F-box photosystem photosynthesis, light reaction geranyl acetate biosynthesis Transcription_related, Transcription regulator: mTERF ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) RNA transport | details |
| TissueCFM001232 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 methylation polysaccharide binding methyltransferase activity | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001467 | Arp2/3 protein complex GPI-anchor transamidase complex trichome morphogenesis Arp2/3 complex-mediated actin nucleation attachment of GPI anchor to protein multidimensional cell growth CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Autophagy - yeast Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Glycerolipid metabolism | details |
| TissueCFM001737 | Transcription_related, Transcription regulator: HMG GPI-anchor transamidase complex attachment of GPI anchor to protein GPI-anchor transamidase activity Base excision repair Glycosylphosphatidylinositol(GPI)-anchor biosynthesis cell wall organization or biogenesis O-acetyltransferase activity Golgi apparatus | details |
| TissueCFM001792 | glutathione biosynthesis glutathione biosynthetic process DNA topological change glutathione synthase activity glutathione binding DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity chromosome Cysteine and methionine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |