TissueCFM000900's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA binding | 0.000629253 | GO:0003723 |
| Spliceosome | 0.004269109 | KEGG pathway |
| triacylglycerol degradation | 0.015006183 | plantCyc |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.02060771 | GO:0008534 |
| nuclear exosome (RNase complex) | 0.022800776 | GO:0000176 |
| U4/U6 x U5 tri-snRNP complex | 0.022800776 | GO:0046540 |
| box C/D snoRNP complex | 0.022800776 | GO:0031428 |
| maturation of SSU-rRNA | 0.027226487 | GO:0030490 |
| maturation of LSU-rRNA | 0.027226487 | GO:0000470 |
| tRNA processing | 0.027226487 | GO:0008033 |
| translation | 0.027226487 | GO:0006412 |
| precatalytic spliceosome | 0.027604432 | GO:0071011 |
| rRNA processing | 0.041259717 | GO:0006364 |
| RNA secondary structure unwinding | 0.041259717 | GO:0010501 |
| mRNA splicing, via spliceosome | 0.042236093 | GO:0000398 |
| Ribosome biogenesis in eukaryotes | 0.048484403 | KEGG pathway |
| RNA degradation | 0.048484403 | KEGG pathway |
| DNA repair | 0.048954573 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003923 | AT5G38890 (2.00E-58) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T012507 | AT5G10740 (4.00E-33) | Protein phosphatase 2C family protein |
| CRO_T017938 | AT5G35530 (1.00E-116) | Ribosomal protein S3 family protein |
| CRO_T025230 | AT5G52490 (5.00E-57) | Fibrillarin family protein |
| CRO_T028117 | AT2G47330 (2.00E-89) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T030279 | AT4G22380 (3.00E-55) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T030456 | AT5G19630 (7.00E-77) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
| TissueCFM001050 | Transcription_related, Transcription factor: B3 aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) ascorbate glutathione cycle NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I cytoplasmic microtubule organization triacylglycerol degradation | details |
| TissueCFM001565 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Legionellosis nucleocytoplasmic transport response to endoplasmic reticulum stress glutathione transferase activity Ran GTPase binding protein serine/threonine phosphatase activity nucleotidyltransferase activity protein transporter activity translation elongation factor activity protein disulfide isomerase activity Fructose and mannose metabolism | details |
| TissueCFM001574 | S-adenosylmethionine cycle nuclear proteasome complex proteasome regulatory particle, base subcomplex cytosolic proteasome complex adenosylhomocysteinase activity S-adenosyl-L-methionine cycle II L-methionine degradation I (to L-homocysteine) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process one-carbon metabolic process ER-associated ubiquitin-dependent protein catabolic process TCA cycle II (plants and fungi) TBP-class protein binding proteasome-activating ATPase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Cysteine and methionine metabolism Proteasome protein dephosphorylation protein serine/threonine phosphatase activity | details |
Expression profiles
 Show details about module gene expression profiling |