TissueCFM001565's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| GDP-mannose biosynthesis | 0.007432079 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.007432079 | plantCyc |
| Legionellosis | 0.016186915 | KEGG pathway |
| nucleocytoplasmic transport | 0.031405473 | GO:0006913 |
| response to endoplasmic reticulum stress | 0.04315127 | GO:0034976 |
| glutathione transferase activity | 0.043631021 | GO:0004364 |
| Ran GTPase binding | 0.043631021 | GO:0008536 |
| protein serine/threonine phosphatase activity | 0.043631021 | GO:0004722 |
| nucleotidyltransferase activity | 0.043631021 | GO:0016779 |
| protein transporter activity | 0.043631021 | GO:0008565 |
| translation elongation factor activity | 0.043631021 | GO:0003746 |
| protein disulfide isomerase activity | 0.043631021 | GO:0003756 |
| Fructose and mannose metabolism | 0.045730313 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002326 | AT1G02930 (2.00E-09) | ATGST1|ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1; ATGSTF3|GLUATIONE S-TRANSFERASE F3; ATGSTF6|GLUTATHIONE S-TRANSFERASE; ERD11|EARLY RESPONSIVE TO DEHYDRATION 11; GST1|GLUTATHIONE S-TRANSFERASE 1; GSTF6|glutathione S-transferase 6 |
| CRO_T003762 | AT1G07210 (2.00E-39) | Ribosomal protein S18 |
| CRO_T008787 | AT1G74910 (0) | ADP-glucose pyrophosphorylase family protein |
| CRO_T012507 | AT5G10740 (4.00E-33) | Protein phosphatase 2C family protein |
| CRO_T020620 | AT4G12540 (1.00E-55) | unknown protein |
| CRO_T022384 | AT3G08943 (0) | ARM repeat superfamily protein |
| CRO_T027212 | AT5G37370 (1.00E-46) | ATSRL1|PRP38 family protein |
| CRO_T029923 | AT1G35620 (7.00E-13) | ATPDI8|PROTEIN DISULFIDE ISOMERASE 8; ATPDIL5-2|PDI-like 5-2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000442 | nucleocytoplasmic transport chromosome organization involved in meiotic cell cycle mitotic recombination-dependent replication fork processing strand invasion response to ionizing radiation DNA recombinase assembly reciprocal meiotic recombination mitotic recombination condensed nuclear chromosome MicroRNAs in cancer endodeoxyribonuclease activity recombinase activity L-amino acid transmembrane transporter activity binding four-way junction DNA binding DNA-dependent ATPase activity single-stranded DNA binding Ran GTPase binding nucleoplasm double-stranded DNA binding amino acid transmembrane transport Homologous recombination protein transporter activity antiporter activity RNA transport | details |
| TissueCFM000724 | L-histidine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase L-glutamate import response to high light intensity L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport cellular nitrogen compound metabolic process histidine biosynthetic process gene expression response to hydrogen peroxide regulation of signal transduction L-glutamate transmembrane transporter activity histidinol-phosphate transaminase activity L-lysine transmembrane transporter activity cellular macromolecule metabolic process cation binding L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TissueCFM000764 | base-excision repair response to salt stress Base excision repair precatalytic spliceosome catalytic activity Spliceosome | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM000900 | RNA binding Spliceosome triacylglycerol degradation oxidized purine nucleobase lesion DNA N-glycosylase activity nuclear exosome (RNase complex) U4/U6 x U5 tri-snRNP complex box C/D snoRNP complex maturation of SSU-rRNA maturation of LSU-rRNA tRNA processing translation precatalytic spliceosome rRNA processing RNA secondary structure unwinding mRNA splicing, via spliceosome Ribosome biogenesis in eukaryotes RNA degradation DNA repair | details |
| TissueCFM000927 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein N-glycosylation (eukaryotic, high mannose) regulation of mitotic metaphase/anaphase transition oligosaccharide-lipid intermediate biosynthetic process protein N-linked glycosylation Transcription_related, Transcription factor: LOB anaphase-promoting complex DNA biosynthetic process DNA-directed DNA polymerase activity nucleotidyltransferase activity biosynthetic process DNA replication Fructose and mannose metabolism N-Glycan biosynthesis Ubiquitin mediated proteolysis | details |
| TissueCFM001574 | S-adenosylmethionine cycle nuclear proteasome complex proteasome regulatory particle, base subcomplex cytosolic proteasome complex adenosylhomocysteinase activity S-adenosyl-L-methionine cycle II L-methionine degradation I (to L-homocysteine) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process one-carbon metabolic process ER-associated ubiquitin-dependent protein catabolic process TCA cycle II (plants and fungi) TBP-class protein binding proteasome-activating ATPase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Cysteine and methionine metabolism Proteasome protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TissueCFM001653 | Biosynthesis of amino acids L-histidine biosynthesis histidinol-phosphate transaminase activity argininosuccinate synthase activity response to high light intensity argininosuccinate metabolic process response to hydrogen peroxide histidine biosynthetic process urea cycle L-phenylalanine:2-oxoglutarate aminotransferase activity arginine biosynthetic process response to heat chloroplast precatalytic spliceosome response to salt stress | details |
Expression profiles
 Show details about module gene expression profiling |