TissueCFM000910's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002127502 | cazy family |
| beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 0.002216312 | GO:0003830 |
| argininosuccinate synthase activity | 0.002216312 | GO:0004055 |
| argininosuccinate metabolic process | 0.006071349 | GO:0000053 |
| urea cycle | 0.006071349 | plantCyc |
| serine-type peptidase activity | 0.007381159 | GO:0008236 |
| protein N-linked glycosylation | 0.008091544 | GO:0006487 |
| arginine biosynthetic process | 0.009098952 | GO:0006526 |
| Biosynthesis of amino acids | 0.024832496 | KEGG pathway |
| N-Glycan biosynthesis | 0.024832496 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000922 | AT1G01490 (1.00E-13) | Heavy metal transport/detoxification superfamily protein |
| CRO_T005344 | AT1G66900 (1.00E-84) | alpha/beta-Hydrolases superfamily protein |
| CRO_T017425 | AT4G24830 (3.00E-50) | arginosuccinate synthase family |
| CRO_T018811 | AT1G13000 (5.00E-117) | Protein of unknown function (DUF707) |
| CRO_T018815 | AT1G12990 (0) | beta-1,4-N-acetylglucosaminyltransferase family protein |
| CRO_T025860 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000622 | L-histidine biosynthesis histidinol dehydrogenase activity regulation of shoot system development histidine biosynthetic process seed maturation regulation of seed germination Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids formation of glycosidic bonds, GlycosylTransferases: GTnc serine-type peptidase activity transcription regulatory region DNA binding pollen development | details |
| TissueCFM000638 | formation of glycosidic bonds, GlycosylTransferases: GTnc histidinol dehydrogenase activity beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity cytokinin-O-glucosides biosynthesis L-histidine biosynthesis protein N-linked glycosylation histidine biosynthetic process transferase activity, transferring hexosyl groups N-Glycan biosynthesis Zeatin biosynthesis pollen development Biosynthesis of amino acids NAD binding | details |
| TissueCFM001178 | cell-cell signaling production of siRNA involved in chromatin silencing by small RNA argininosuccinate metabolic process long-distance posttranscriptional gene silencing urea cycle NOD-like receptor signaling pathway transcription, RNA-templated production of siRNA involved in RNA interference Transcription_related, Transcription regulator: mTERF formation of glycosidic bonds, GlycosylTransferases: GTnc argininosuccinate synthase activity | details |
| TissueCFM001653 | Biosynthesis of amino acids L-histidine biosynthesis histidinol-phosphate transaminase activity argininosuccinate synthase activity response to high light intensity argininosuccinate metabolic process response to hydrogen peroxide histidine biosynthetic process urea cycle L-phenylalanine:2-oxoglutarate aminotransferase activity arginine biosynthetic process response to heat chloroplast precatalytic spliceosome response to salt stress | details |
| TissueCFM001655 | cell-cell signaling argininosuccinate metabolic process production of siRNA involved in chromatin silencing by small RNA long-distance posttranscriptional gene silencing response to high light intensity urea cycle production of siRNA involved in RNA interference response to hydrogen peroxide transcription, RNA-templated arginine biosynthetic process argininosuccinate synthase activity defense response to fungus response to heat ribosome biogenesis RNA-directed RNA polymerase activity DNA-directed RNA polymerase III complex mitochondrion RNA polymerase III activity | details |
Expression profiles
 Show details about module gene expression profiling |