TissueCFM001655's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cell-cell signaling | 0.010757061 | GO:0007267 |
| argininosuccinate metabolic process | 0.010757061 | GO:0000053 |
| production of siRNA involved in chromatin silencing by small RNA | 0.010757061 | GO:0070919 |
| long-distance posttranscriptional gene silencing | 0.010757061 | GO:0010495 |
| response to high light intensity | 0.010757061 | GO:0009644 |
| urea cycle | 0.010757061 | plantCyc |
| production of siRNA involved in RNA interference | 0.011947346 | GO:0030422 |
| response to hydrogen peroxide | 0.011947346 | GO:0042542 |
| transcription, RNA-templated | 0.011947346 | GO:0001172 |
| arginine biosynthetic process | 0.019338693 | GO:0006526 |
| argininosuccinate synthase activity | 0.020770369 | GO:0004055 |
| defense response to fungus | 0.023426299 | GO:0050832 |
| response to heat | 0.025042765 | GO:0009408 |
| ribosome biogenesis | 0.025585217 | GO:0042254 |
| RNA-directed RNA polymerase activity | 0.031136223 | GO:0003968 |
| DNA-directed RNA polymerase III complex | 0.034644907 | GO:0005666 |
| mitochondrion | 0.034644907 | GO:0005739 |
| RNA polymerase III activity | 0.041476338 | GO:0001056 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000987 | AT4G10620 (3.00E-156) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T005817 | AT5G17510 (5.00E-77) | unknown protein |
| CRO_T017267 | AT1G10820 (2.00E-19) | Protein of unknown function (DUF3755) |
| CRO_T017425 | AT4G24830 (3.00E-50) | arginosuccinate synthase family |
| CRO_T018562 | AT1G14790 (0) | RDR1|RNA-dependent RNA polymerase 1 |
| CRO_T022306 | AT4G27670 (6.00E-15) | HSP21|heat shock protein 21 |
| CRO_T024040 | AT1G69510 (5.00E-21) | cAMP-regulated phosphoprotein 19-related protein |
| CRO_T033645 | AT3G49000 (3.00E-54) | RNA polymerase III subunit RPC82 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000724 | L-histidine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase L-glutamate import response to high light intensity L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport cellular nitrogen compound metabolic process histidine biosynthetic process gene expression response to hydrogen peroxide regulation of signal transduction L-glutamate transmembrane transporter activity histidinol-phosphate transaminase activity L-lysine transmembrane transporter activity cellular macromolecule metabolic process cation binding L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM000813 | Ribosome 5S rRNA binding rRNA primary transcript binding gene expression cellular nitrogen compound metabolic process response to high light intensity regulation of signal transduction maturation of 5.8S rRNA response to hydrogen peroxide maturation of LSU-rRNA cellular macromolecule metabolic process response to heat ribosomal large subunit assembly primary metabolic process preribosome, large subunit precursor | details |
| TissueCFM000910 | formation of glycosidic bonds, GlycosylTransferases: GTnc beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity argininosuccinate synthase activity argininosuccinate metabolic process urea cycle serine-type peptidase activity protein N-linked glycosylation arginine biosynthetic process Biosynthesis of amino acids N-Glycan biosynthesis | details |
| TissueCFM001068 | RNA transport photorespiration tRNA (guanine) methyltransferase activity chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution nuclear pore outer ring condensed chromosome kinetochore RNA export from nucleus RNA polymerase I activity nucleocytoplasmic transporter activity structural constituent of nuclear pore DNA-directed RNA polymerase I complex phosphatase activity tRNA methylation protein import into nucleus dephosphorylation | details |
| TissueCFM001131 | Aminoacyl-tRNA biosynthesis N-terminal peptidyl-methionine acetylation leucyl-tRNA aminoacylation phenylalanyl-tRNA aminoacylation regulation of translational fidelity DNA topological change phenylalanine-tRNA ligase complex Transcription_related, Transcription factor: M-type hydrolase activity, acting on acid anhydrides phenylalanine-tRNA ligase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity leucine-tRNA ligase activity aminoacyl-tRNA editing activity peptide alpha-N-acetyltransferase activity | details |
| TissueCFM001178 | cell-cell signaling production of siRNA involved in chromatin silencing by small RNA argininosuccinate metabolic process long-distance posttranscriptional gene silencing urea cycle NOD-like receptor signaling pathway transcription, RNA-templated production of siRNA involved in RNA interference Transcription_related, Transcription regulator: mTERF formation of glycosidic bonds, GlycosylTransferases: GTnc argininosuccinate synthase activity | details |
| TissueCFM001409 | nucleolus photorespiration positive regulation of transport protein binding involved in protein folding megagametogenesis cytosol phosphatase activity ribosomal large subunit assembly rRNA processing Ubiquitin_Proteasome_system, E3 adaptor: DWD unfolded protein binding dephosphorylation Ribosome biogenesis in eukaryotes protein folding | details |
| TissueCFM001653 | Biosynthesis of amino acids L-histidine biosynthesis histidinol-phosphate transaminase activity argininosuccinate synthase activity response to high light intensity argininosuccinate metabolic process response to hydrogen peroxide histidine biosynthetic process urea cycle L-phenylalanine:2-oxoglutarate aminotransferase activity arginine biosynthetic process response to heat chloroplast precatalytic spliceosome response to salt stress | details |
| TissueCFM001656 | Transcription_related, Transcription regulator: mTERF negative regulation of microtubule depolymerization microtubule plus-end binding cortical microtubule organization protein stabilization mitotic nuclear division cell growth cell cortex spindle microtubule ribosome biogenesis RNA secondary structure unwinding phragmoplast | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |