TissueCFM001033's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX | 0.008772705 | kinase family |
| intracellular organelle | 0.010624943 | GO:0043229 |
| Homologous recombination | 0.011296492 | KEGG pathway |
| 3'-5' DNA helicase activity | 0.01930423 | GO:0043138 |
| ATP-dependent helicase activity | 0.024114247 | GO:0008026 |
| DNA recombination | 0.024339834 | GO:0006310 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.027681891 | GO:0043161 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000035 | AT1G04360 (1.00E-17) | RING/U-box superfamily protein |
| CRO_T000039 | - | - |
| CRO_T004461 | AT3G26600 (3.00E-180) | ARO4|armadillo repeat only 4 |
| CRO_T011028 | AT4G17410 (2.00E-81) | DWNN domain, a CCHC-type zinc finger |
| CRO_T019732 | - | - |
| CRO_T030263 | AT3G57120 (4.00E-119) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000412 | response to chitin Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Ubiquitin_Proteasome_system, E3: RING metal ion binding aminoacyl-tRNA ligase activity transcription regulatory region DNA binding proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TissueCFM000636 | eugenol and isoeugenol biosynthesis L-glutamine degradation I L-histidine biosynthesis pseudouridine degradation Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription factor: BES1 DNA N-glycosylase activity beta-N-acetylhexosaminidase activity transferase activity, transferring pentosyl groups Transcription_related, Transcription factor: C2C2-GATA Ubiquitin_Proteasome_system, E1: ThiF THO complex DNA-directed RNA polymerase V complex Golgi apparatus Cul4-RING E3 ubiquitin ligase complex production of ta-siRNAs involved in RNA interference regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation | details |
| TissueCFM000978 | phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II choline biosynthesis I response to chitin Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, E3: U-box transcription regulatory region DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |