TissueCFM001045's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| origin recognition complex | 0.003909574 | GO:0000808 |
| peroxisomal matrix | 0.003909574 | GO:0005782 |
| inositol-1,3,4-trisphosphate 5-kinase activity | 0.006018637 | GO:0052726 |
| inositol-1,3,4-trisphosphate 6-kinase activity | 0.006018637 | GO:0052725 |
| inositol tetrakisphosphate 1-kinase activity | 0.006018637 | GO:0047325 |
| misfolded or incompletely synthesized protein catabolic process | 0.006230466 | GO:0006515 |
| lateral root development | 0.006230466 | GO:0048527 |
| growth | 0.006230466 | GO:0040007 |
| protein import into peroxisome matrix, docking | 0.006230466 | GO:0016560 |
| inositol trisphosphate metabolic process | 0.006230466 | GO:0032957 |
| lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) | 0.006378735 | plantCyc |
| 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) | 0.008227641 | plantCyc |
| ATP binding | 0.009069884 | GO:0005524 |
| DNA-dependent ATPase activity | 0.012629801 | GO:0008094 |
| ATP-dependent peptidase activity | 0.018779078 | GO:0004176 |
| protein processing | 0.020740617 | GO:0016485 |
| Cell cycle | 0.023534359 | KEGG pathway |
| Cell cycle - Caulobacter | 0.023534359 | KEGG pathway |
| Homologous recombination | 0.023534359 | KEGG pathway |
| Inositol phosphate metabolism | 0.023534359 | KEGG pathway |
| DNA replication | 0.034018533 | KEGG pathway |
| DNA repair | 0.0413344 | GO:0006281 |
| vesicle-mediated transport | 0.0413344 | GO:0016192 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000521 | AT2G35790 (1.00E-67) | unknown protein |
| CRO_T010356 | AT3G22880 (2.00E-22) | ARLIM15|ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15; ATDMC1|DISRUPTION OF MEIOTIC CONTROL 1 |
| CRO_T016415 | AT5G47040 (0) | LON2|lon protease 2 |
| CRO_T019767 | AT2G37560 (8.00E-94) | ATORC2|ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2 |
| CRO_T027738 | AT4G33770 (4.00E-90) | ITPK2|inositol 1,3,4-trisphosphate 5/6 kinase 2 |
| CRO_T029296 | AT4G26550 (6.00E-74) | Got1/Sft2-like vescicle transport protein family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001589 | Thyroid hormone signaling pathway mature ribosome assembly Transcription_related, Transcription factor: SBP ribosomal large subunit biogenesis ribosomal large subunit binding ribosome binding translational initiation Ribosome biogenesis in eukaryotes Transcription_related, Transcription factor: MYB translation initiation factor activity | details |
| TissueCFM001698 | lysophospholipase activity palmitoyl-(protein) hydrolase activity long-day photoperiodism protein depalmitoylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay benzoate biosynthesis I (CoA-dependent, β-oxidative) sugar mediated signaling pathway response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway Glycerophospholipid metabolism defense response to bacterium zinc ion binding helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD cell redox homeostasis vesicle-mediated transport RNA transport | details |
| TissueCFM001803 | alcohol dehydrogenase (NADP+) activity NADP+ binding steroid dehydrogenase activity Ferroptosis Thyroid hormone signaling pathway detoxification of reactive carbonyls in chloroplasts iron ion transmembrane transporter activity response to absence of light response to red light response to toxic substance response to far red light iron ion transmembrane transport nuclear body Transcription_related, Transcription factor: MYB response to cold response to water deprivation response to salt stress helicase activity protein homodimerization activity | details |
| TissueCFM001839 | cell vesicle-mediated transport cell redox homeostasis Transcription_related, Transcription factor: bHLH calcium ion binding protein dimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |