TissueCFM001803's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| alcohol dehydrogenase (NADP+) activity | 0.002998513 | GO:0008106 |
| NADP+ binding | 0.002998513 | GO:0070401 |
| steroid dehydrogenase activity | 0.002998513 | GO:0016229 |
| Ferroptosis | 0.004548541 | KEGG pathway |
| Thyroid hormone signaling pathway | 0.004548541 | KEGG pathway |
| detoxification of reactive carbonyls in chloroplasts | 0.006396253 | plantCyc |
| iron ion transmembrane transporter activity | 0.006744261 | GO:0005381 |
| response to absence of light | 0.009616079 | GO:0009646 |
| response to red light | 0.009616079 | GO:0010114 |
| response to toxic substance | 0.009616079 | GO:0009636 |
| response to far red light | 0.009616079 | GO:0010218 |
| iron ion transmembrane transport | 0.009616079 | GO:0034755 |
| nuclear body | 0.012061596 | GO:0016604 |
| Transcription_related, Transcription factor: MYB | 0.018676529 | TF family |
| response to cold | 0.020585796 | GO:0009409 |
| response to water deprivation | 0.037184505 | GO:0009414 |
| response to salt stress | 0.038506099 | GO:0009651 |
| helicase activity | 0.046971899 | GO:0004386 |
| protein homodimerization activity | 0.046971899 | GO:0042803 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013739 | AT3G55470 (9.00E-20) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T015565 | AT3G52250 (3.00E-07) | Duplicated homeodomain-like superfamily protein |
| CRO_T017115 | - | - |
| CRO_T021602 | AT5G03570 (1.00E-155) | ATIREG2|IRON-REGULATED PROTEIN 2; FPN2|FERROPORTIN 2; IREG2|iron regulated 2 |
| CRO_T021902 | AT2G21260 (6.00E-44) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T029296 | AT4G26550 (6.00E-74) | Got1/Sft2-like vescicle transport protein family |
| CRO_T030792 | AT1G55150 (2.00E-115) | RH20|RNA helicase 20 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001045 | origin recognition complex peroxisomal matrix inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity inositol tetrakisphosphate 1-kinase activity misfolded or incompletely synthesized protein catabolic process lateral root development growth protein import into peroxisome matrix, docking inositol trisphosphate metabolic process lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ATP binding DNA-dependent ATPase activity ATP-dependent peptidase activity protein processing Cell cycle Cell cycle - Caulobacter Homologous recombination Inositol phosphate metabolism DNA replication DNA repair vesicle-mediated transport | details |
| TissueCFM001187 | formation of glycosidic bonds, GlycosylTransferases: GTnc NADP+ binding steroid dehydrogenase activity alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts Basal transcription factors cation transmembrane transporter activity response to absence of light response to toxic substance response to red light response to far red light calcium-transporting ATPase activity cation transmembrane transport response to cold DNA-templated transcription, initiation calcium ion transmembrane transport nuclear body response to water deprivation response to salt stress translational initiation | details |
| TissueCFM001324 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity formation of glycosidic bonds, GlycosylTransferases: GTnc Rab GDP-dissociation inhibitor activity Apelin signaling pathway mitochondrial electron transport, NADH to ubiquinone response to far red light response to toxic substance response to absence of light response to red light cellular response to nitrogen starvation nuclear body plasma membrane respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) detoxification of reactive carbonyls in chloroplasts NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis response to cold calcium ion transmembrane transport autophagy calcium-transporting ATPase activity mitochondrial respiratory chain complex I regulation of catalytic activity response to water deprivation response to salt stress protein transport small GTPase mediated signal transduction | details |
| TissueCFM001589 | Thyroid hormone signaling pathway mature ribosome assembly Transcription_related, Transcription factor: SBP ribosomal large subunit biogenesis ribosomal large subunit binding ribosome binding translational initiation Ribosome biogenesis in eukaryotes Transcription_related, Transcription factor: MYB translation initiation factor activity | details |
| TissueCFM001698 | lysophospholipase activity palmitoyl-(protein) hydrolase activity long-day photoperiodism protein depalmitoylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay benzoate biosynthesis I (CoA-dependent, β-oxidative) sugar mediated signaling pathway response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway Glycerophospholipid metabolism defense response to bacterium zinc ion binding helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD cell redox homeostasis vesicle-mediated transport RNA transport | details |
| TissueCFM001750 | alcohol dehydrogenase (NADP+) activity NADP+ binding steroid dehydrogenase activity clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit aspartate kinase activity L-homoserine biosynthesis nuclear body L-lysine biosynthesis VI detoxification of reactive carbonyls in chloroplasts structural molecule activity response to toxic substance response to absence of light response to far red light response to red light amino acid binding DNA-templated transcription, initiation response to cold embryo sac development 2-Oxocarboxylic acid metabolism Basal transcription factors protein homodimerization activity cellular amino acid biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Endocytosis Ribosome biogenesis in eukaryotes translation initiation factor activity response to salt stress rRNA processing response to water deprivation translational initiation | details |
| TissueCFM001839 | cell vesicle-mediated transport cell redox homeostasis Transcription_related, Transcription factor: bHLH calcium ion binding protein dimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |