TissueCFM001589's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Thyroid hormone signaling pathway | 0.004253747 | KEGG pathway |
| mature ribosome assembly | 0.007798537 | GO:0042256 |
| Transcription_related, Transcription factor: SBP | 0.007971652 | TF family |
| ribosomal large subunit biogenesis | 0.008280437 | GO:0042273 |
| ribosomal large subunit binding | 0.008772705 | GO:0043023 |
| ribosome binding | 0.012169917 | GO:0043022 |
| translational initiation | 0.016519326 | GO:0006413 |
| Ribosome biogenesis in eukaryotes | 0.022469848 | KEGG pathway |
| Transcription_related, Transcription factor: MYB | 0.024045297 | TF family |
| translation initiation factor activity | 0.025214511 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000521 | AT2G35790 (1.00E-67) | unknown protein |
| CRO_T005626 | AT1G10330 (3.00E-21) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T005743 | AT2G47070 (0) | SPL1|squamosa promoter binding protein-like 1 |
| CRO_T012487 | AT3G55620 (1.00E-132) | eIF6A|eukaryotic initiation facor 6A; emb1624|embryo defective 1624 |
| CRO_T015565 | AT3G52250 (3.00E-07) | Duplicated homeodomain-like superfamily protein |
| CRO_T023075 | AT4G22000 (6.00E-41) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001045 | origin recognition complex peroxisomal matrix inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity inositol tetrakisphosphate 1-kinase activity misfolded or incompletely synthesized protein catabolic process lateral root development growth protein import into peroxisome matrix, docking inositol trisphosphate metabolic process lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ATP binding DNA-dependent ATPase activity ATP-dependent peptidase activity protein processing Cell cycle Cell cycle - Caulobacter Homologous recombination Inositol phosphate metabolism DNA replication DNA repair vesicle-mediated transport | details |
| TissueCFM001199 | D-myo-inositol (1,4,5)-trisphosphate degradation Transcription_related, Transcription factor: SBP Transcription_related, Transcription regulator: GNAT peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity long-day photoperiodism N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation stem cell fate determination internal protein amino acid acetylation meristem maintenance cellular calcium ion homeostasis nuclear-transcribed mRNA catabolic process, nonsense-mediated decay pollen maturation NatA complex sugar mediated signaling pathway phosphatidylinositol dephosphorylation cellular response to phosphate starvation pollen germination response to wounding nucleic acid metabolic process cellular macromolecule metabolic process cation transmembrane transport salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cation-transporting ATPase activity | details |
| TissueCFM001803 | alcohol dehydrogenase (NADP+) activity NADP+ binding steroid dehydrogenase activity Ferroptosis Thyroid hormone signaling pathway detoxification of reactive carbonyls in chloroplasts iron ion transmembrane transporter activity response to absence of light response to red light response to toxic substance response to far red light iron ion transmembrane transport nuclear body Transcription_related, Transcription factor: MYB response to cold response to water deprivation response to salt stress helicase activity protein homodimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |