TissueCFM001073's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Estrogen signaling pathway | 0.003456017 | KEGG pathway |
| maturation of SSU-rRNA | 0.01952275 | GO:0030490 |
| chloroplast fission | 0.01952275 | GO:0010020 |
| plastid organization | 0.01952275 | GO:0009657 |
| protein import into mitochondrial outer membrane | 0.01952275 | GO:0045040 |
| potassium ion transport | 0.01952275 | GO:0006813 |
| peroxisome fission | 0.01952275 | GO:0016559 |
| Transcription_related, Transcription factor: HB | 0.028435331 | TF family |
| chaperone-mediated protein folding | 0.030624291 | GO:0061077 |
| Ribosome biogenesis in eukaryotes | 0.04825469 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001082 | AT4G02400 (5.00E-86) | U3 ribonucleoprotein (Utp) family protein |
| CRO_T001246 | AT1G12110 (9.00E-68) | ATNRT1|NITRATE TRANSPORTER 1; CHL1|CHLORINA 1; NPF6.3|NRT1/ PTR family 6.3; NRT1.1|nitrate transporter 1.1 |
| CRO_T001968 | AT1G23380 (4.00E-19) | KNAT6|KNOTTED1-like homeobox gene 6 |
| CRO_T003021 | AT1G28530 (2.00E-84) | unknown protein |
| CRO_T008918 | AT1G30960 (9.00E-114) | GTP-binding family protein |
| CRO_T011514 | AT1G30240 (2.00E-100) | unknown protein |
| CRO_T013441 | AT1G01790 (0) | ATKEA1|K+ EFFLUX ANTIPORTER 1 |
| CRO_T017872 | AT5G21990 (2.00E-10) | OEP61|outer envelope protein 61; TPR7|tetratricopeptide repeat 7 |
| CRO_T020364 | AT5G46460 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T022054 | AT1G74630 (3.00E-110) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T023480 | AT2G02980 (3.00E-85) | OTP85|ORGANELLE TRANSCRIPT PROCESSING 85 |
| CRO_T031641 | AT3G19720 (0) | ARC5|ACCUMULATION AND REPLICATION OF CHLOROPLAST 5; DRP5B|Dynamin related protein 5B |
| CRO_T033819 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001074 | nucleolus small-subunit processome maturation of SSU-rRNA Ribosome biogenesis in eukaryotes 90S preribosome maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Spliceosome | details |
| TissueCFM001683 | Apelin signaling pathway cellular response to nitrogen starvation proteasome assembly autophagy triacylglycerol degradation lipid metabolic process | details |
| TissueCFM001735 | GTPase activity GTP binding peroxisome fission chloroplast fission Ubiquitin mediated proteolysis ribosomal large subunit biogenesis translational elongation protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development proteasome-mediated ubiquitin-dependent protein catabolic process identical protein binding translation elongation factor activity zinc ion binding chloroplast outer membrane | details |
| TissueCFM001799 | mitochondrial outer membrane translocase complex protein import into mitochondrial outer membrane Ubiquitin_Proteasome_system, DUB: USP Transcription_related, Transcription factor: FAR1 cysteine-type peptidase activity cellular protein metabolic process small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |