TissueCFM001683's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Apelin signaling pathway | 0.004071992 | KEGG pathway |
| cellular response to nitrogen starvation | 0.005907982 | GO:0006995 |
| proteasome assembly | 0.005907982 | GO:0043248 |
| autophagy | 0.007872655 | GO:0006914 |
| triacylglycerol degradation | 0.012876498 | plantCyc |
| lipid metabolic process | 0.028287598 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001246 | AT1G12110 (9.00E-68) | ATNRT1|NITRATE TRANSPORTER 1; CHL1|CHLORINA 1; NPF6.3|NRT1/ PTR family 6.3; NRT1.1|nitrate transporter 1.1 |
| CRO_T006607 | AT2G05630 (2.00E-53) | ATG8D|Ubiquitin-like superfamily protein |
| CRO_T012748 | AT4G19540 (6.00E-98) | INDH|iron-sulfur protein required for NADH dehydrogenase; INDL|IND1(iron-sulfur protein required for NADH dehydrogenase)-like |
| CRO_T020538 | AT3G07400 (0) | lipase class 3 family protein |
| CRO_T024068 | AT1G48170 (1.00E-50) | unknown protein |
| CRO_T032927 | AT3G28210 (5.00E-56) | SAP12|STRESS-ASSOCIATED PROTEIN 12 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000244 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc sucrose biosynthesis II maltose catabolic process glycogen metabolic process starch binding heteropolysaccharide binding 4-alpha-glucanotransferase activity triacylglycerol degradation nucleosome assembly histone binding Starch and sucrose metabolism Ubiquitin mediated proteolysis multicellular organism development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process lipid metabolic process drug transmembrane transport | details |
| TissueCFM000784 | MAPK signaling pathway Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein deubiquitination ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction | details |
| TissueCFM001073 | Estrogen signaling pathway maturation of SSU-rRNA chloroplast fission plastid organization protein import into mitochondrial outer membrane potassium ion transport peroxisome fission Transcription_related, Transcription factor: HB chaperone-mediated protein folding Ribosome biogenesis in eukaryotes | details |
| TissueCFM001205 | Ubiquitin_Proteasome_system, DUB: UCH thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis Transcription_related, Transcription factor: HSF protein deubiquitination leaf development ubiquitin-dependent protein catabolic process | details |
| TissueCFM001458 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity cytoskeleton organization gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt microtubule binding | details |
| TissueCFM001506 | Ubiquitin_Proteasome_system, DUB: UCH triacylglycerol degradation transmembrane receptor protein kinase activity thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis leaf development protein deubiquitination | details |
| TissueCFM001735 | GTPase activity GTP binding peroxisome fission chloroplast fission Ubiquitin mediated proteolysis ribosomal large subunit biogenesis translational elongation protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development proteasome-mediated ubiquitin-dependent protein catabolic process identical protein binding translation elongation factor activity zinc ion binding chloroplast outer membrane | details |
| TissueCFM001766 | UMP salvage polyamine biosynthetic process CTP salvage pyrimidine nucleobase metabolic process putrescine biosynthesis II pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage isocitrate dehydrogenase (NAD+) activity N-carbamoylputrescine amidase activity L-leucine biosynthesis pyrimidine ribonucleosides salvage I pyrimidine salvage pathway uridine kinase activity nickel cation binding L-glutamine biosynthesis III TCA cycle II (plants and fungi) nitrogen compound metabolic process tricarboxylic acid cycle Arginine and proline metabolism Peroxisome Pyrimidine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |