TissueCFM001094's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I | 0.012505163 | plantCyc |
| GDP-glucose biosynthesis | 0.012505163 | plantCyc |
| oxidized GTP and dGTP detoxification | 0.012505163 | plantCyc |
| GDP-mannose biosynthesis | 0.016067381 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.01961182 | plantCyc |
| tetrahydrofolate biosynthesis II | 0.01961182 | plantCyc |
| RIG-I-like receptor signaling pathway | 0.023597897 | KEGG pathway |
| MAPK signaling pathway - yeast | 0.025256581 | KEGG pathway |
| mannose-1-phosphate guanylyltransferase (GDP) activity | 0.033005075 | GO:0008928 |
| homogalacturonan degradation | 0.037306655 | plantCyc |
| Fructose and mannose metabolism | 0.038069236 | KEGG pathway |
| RNA secondary structure unwinding | 0.039574963 | GO:0010501 |
| pectin catabolic process | 0.039574963 | GO:0045490 |
| microtubule-based movement | 0.039574963 | GO:0007018 |
| cell wall modification | 0.039574963 | GO:0042545 |
| biosynthetic process | 0.039574963 | GO:0009058 |
| mRNA processing | 0.039574963 | GO:0006397 |
| negative regulation of catalytic activity | 0.039574963 | GO:0043086 |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.045789213 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001266 | - | - |
| CRO_T002438 | AT1G26520 (3.00E-142) | Cobalamin biosynthesis CobW-like protein |
| CRO_T008500 | AT1G78220 (3.00E-56) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T015091 | AT2G19220 (5.00E-15) | unknown protein |
| CRO_T019042 | AT3G49660 (4.00E-20) | WDR5a|human WDR5 (WD40 repeat) homolog a |
| CRO_T020125 | AT2G39770 (0) | CYT1|CYTOKINESIS DEFECTIVE 1; EMB101|EMBRYO DEFECTIVE 101; GMP1|GDP-MANNOSE PYROPHOSPHORYLASE 1; SOZ1|SENSITIVE TO OZONE 1; VTC1|VITAMIN C DEFECTIVE 1 |
| CRO_T020293 | AT1G68760 (2.00E-33) | ATNUDT1|NUDIX HYDROLASE HOMOLOG 1; ATNUDX1|nudix hydrolase 1; NUDX1|NUDIX HYDROLASE 1 |
| CRO_T021512 | AT1G53830 (0) | ATPME2|pectin methylesterase 2 |
| CRO_T021782 | AT3G16630 (0) | ATKINESIN-13A; KINESIN-13A|P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T032746 | AT3G58570 (2.00E-121) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000069 | acetyl-CoA carboxylase activity AMP dimethylallyltransferase activity tRNA dimethylallyltransferase activity acetyl-CoA carboxylase complex trans-zeatin biosynthesis fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) tRNA modification mRNA processing Phenylpropanoid biosynthesis coenzyme binding | details |
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM000618 | Transcription_related, Transcription factor: ARF 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I oxidized GTP and dGTP detoxification acyl-[acyl-carrier-protein] hydrolase activity ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process palmitoyl-(protein) hydrolase activity solute:proton antiporter activity oleate biosynthesis I (plants) tetrahydrofolate biosynthesis II macromolecule depalmitoylation Fatty acid metabolism auxin-activated signaling pathway fatty acid biosynthetic process hydrogen ion transmembrane transport | details |
| TissueCFM000778 | protein phosphorylation ATP binding protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasma membrane cell surface cortical microtubule endocytic vesicle α-amyrin biosynthesis 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I oxidized GTP and dGTP detoxification vernolate biosynthesis I Transcription_related, Transcription factor: C3H (R)-2-hydroxyglutarate dehydrogenase activity 2-hydroxyglutarate dehydrogenase activity fatty acid in-chain hydroxylase activity Cytochrome_P450, Cytochrome P450: CYP77A regulation of asymmetric cell division cuticle development Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase root cap development mangrove triterpenoid biosynthesis poly-hydroxy fatty acids biosynthesis | details |
| TissueCFM000985 | caffeoyl-CoA O-methyltransferase activity mannose-1-phosphate guanylyltransferase (GDP) activity chrysoeriol biosynthesis GDP-glucose biosynthesis GDP-mannose biosynthesis gossypetin metabolism methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis scopoletin biosynthesis UDP-D-galacturonate biosynthesis II (from D-galacturonate) Phenylalanine metabolism Fructose and mannose metabolism L-ascorbate biosynthesis I (L-galactose pathway) phosphotransferase activity, alcohol group as acceptor chlorogenic acid biosynthesis I Amino sugar and nucleotide sugar metabolism syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Phenylpropanoid biosynthesis microtubule-based movement biosynthetic process ribosome biogenesis | details |
| TissueCFM001184 | Hedgehog signaling pathway Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box ABC transporters Transcription_related, Transcription factor: MYB-related mRNA surveillance pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc microtubule-based movement S-adenosylmethionine-dependent methyltransferase activity microtubule motor activity ATPase activity ATPase activity, coupled to transmembrane movement of substances transferase activity, transferring glycosyl groups microtubule binding | details |
| TissueCFM001195 | abscisic acid biosynthesis regulation of abscisic acid biosynthetic process response to fructose abscisic acid biosynthetic process proline biosynthetic process xanthoxin dehydrogenase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Carotenoid biosynthesis response to heat mRNA splicing, via spliceosome microtubule-based movement response to water deprivation heterocyclic compound binding organic cyclic compound binding microtubule motor activity ATPase activity microtubule binding kinesin complex spliceosomal complex microtubule Spliceosome | details |
| TissueCFM001213 | lipid IVA biosynthesis acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity lipid X metabolic process Lipopolysaccharide biosynthesis CDP-diacylglycerol biosynthesis I Transcription_related, Transcription factor: C2C2-GATA glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity diacylglycerol and triacylglycerol biosynthesis cutin biosynthetic process mRNA processing response to biotic stimulus Glycerolipid metabolism mRNA surveillance pathway | details |
| TissueCFM001241 | uracil degradation I (reductive) non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 protein targeting to membrane uracil catabolic process beta-ureidopropionase activity MAPK signaling pathway - yeast Pyrimidine metabolism SNARE interactions in vesicular transport vesicle docking microtubule-based movement vesicle fusion response to stimulus pectin catabolic process pectate lyase activity protein domain specific binding Pentose and glucuronate interconversions SNARE binding SNAP receptor activity microtubule motor activity | details |
| TissueCFM001349 | xylogalacturonan biosynthesis microtubule-based movement formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III kinesin complex microtubule microtubule motor activity microtubule binding ATPase activity | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
Expression profiles
 Show details about module gene expression profiling |