TissueCFM001100's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly | 0.003218323 | GO:0001129 |
| transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly | 0.003218323 | GO:0001075 |
| Basal transcription factors | 0.007249122 | KEGG pathway |
| positive regulation of transcription from RNA polymerase II promoter | 0.011808982 | GO:0045944 |
| macromolecule metabolic process | 0.011808982 | GO:0043170 |
| glucan endo-1,3-beta-D-glucosidase activity | 0.013662721 | GO:0042973 |
| transcription regulatory region DNA binding | 0.013662721 | GO:0044212 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.014307688 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.014307688 | cazy family |
| transcription factor TFIID complex | 0.016088047 | GO:0005669 |
| primary metabolic process | 0.018667188 | GO:0044238 |
| chromatin binding | 0.025674396 | GO:0003682 |
| polysaccharide binding | 0.0325773 | GO:0030247 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009382 | AT2G27500 (8.00E-116) | Glycosyl hydrolase superfamily protein |
| CRO_T011128 | AT1G73960 (0) | TAF2|TBP-associated factor 2 |
| CRO_T016374 | - | - |
| CRO_T021851 | AT3G19830 (2.00E-12) | NTMC2T5.2; NTMC2TYPE5.2|Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T022269 | AT1G79490 (0) | EMB2217|embryo defective 2217 |
| CRO_T026765 | AT4G27500 (2.00E-21) | PPI1|proton pump interactor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000578 | Lysosome sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: bZIP lipid binding polysaccharide binding | details |
| TissueCFM000718 | transferase activity, transferring phosphorus-containing groups Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Trihelix N-Glycan biosynthesis methyltransferase activity methylation | details |
| TissueCFM000952 | endosome trans-Golgi network 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc fructokinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity ribokinase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity pectin biosynthetic process folic acid-containing compound biosynthetic process D-ribose metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I homogalacturonan biosynthesis sucrose degradation III (sucrose invertase) tetrahydrofolate biosynthesis II xylogalacturonan biosynthesis carbohydrate phosphorylation Folate biosynthesis Fructose and mannose metabolism secologanin and strictosidine biosynthesis | details |
| TissueCFM001025 | methylation | details |
| TissueCFM001098 | seed maturation regulation of shoot system development regulation of seed germination Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB transcription regulatory region DNA binding embryo development ending in seed dormancy | details |
| TissueCFM001432 | protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity mRNA surveillance pathway Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF signal transduction | details |
| TissueCFM001795 | inositol trisphosphate metabolic process regulation of proton transport inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity geranyltranstransferase activity inositol tetrakisphosphate 1-kinase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis inositol pyrophosphates biosynthesis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) dimethylallyltranstransferase activity isoprenoid biosynthetic process 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ABC transporters Inositol phosphate metabolism Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |