TissueCFM000578's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Lysosome | 0.00953551 | KEGG pathway |
| sequence-specific DNA binding | 0.011285055 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.011751813 | GO:0003700 |
| glucan endo-1,3-beta-D-glucosidase activity | 0.0141487 | GO:0042973 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.026166959 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.026166959 | cazy family |
| Transcription_related, Transcription factor: bZIP | 0.026166959 | TF family |
| lipid binding | 0.032481052 | GO:0008289 |
| polysaccharide binding | 0.036783937 | GO:0030247 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001597 | AT1G32150 (6.00E-23) | bZIP68|basic region/leucine zipper transcription factor 68 |
| CRO_T007351 | AT1G10730 (0) | AP1M1|adaptor protein-1 mu-adaptin 1 |
| CRO_T009382 | AT2G27500 (8.00E-116) | Glycosyl hydrolase superfamily protein |
| CRO_T013599 | AT5G35180 (3.00E-62) | Protein of unknown function (DUF1336) |
| CRO_T019906 | AT5G63320 (1.00E-26) | NPX1|nuclear protein X1 |
| CRO_T021851 | AT3G19830 (2.00E-12) | NTMC2T5.2; NTMC2TYPE5.2|Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T022269 | AT1G79490 (0) | EMB2217|embryo defective 2217 |
| CRO_T023277 | AT1G33780 (2.00E-91) | Protein of unknown function (DUF179) |
| CRO_T026312 | AT2G46270 (9.00E-14) | GBF3|G-box binding factor 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000014 | Transcription_related, Transcription factor: B3 drug transmembrane transport MAPK signaling pathway - plant antiporter activity drug transmembrane transporter activity | details |
| TissueCFM000039 | clathrin adaptor complex Lysosome intracellular protein transport vesicle-mediated transport | details |
| TissueCFM000199 | Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family | details |
| TissueCFM000213 | Lysosome clathrin adaptor complex thylakoid | details |
| TissueCFM000214 | Lysosome clathrin adaptor complex thylakoid | details |
| TissueCFM000255 | NAD metabolic process NADP biosynthetic process phosphorylation Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase NAD+ kinase activity NAD/NADH phosphorylation and dephosphorylation RNA metabolic process Nicotinate and nicotinamide metabolism Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000275 | magnoflorine biosynthesis Lysosome clathrin adaptor complex | details |
| TissueCFM000718 | transferase activity, transferring phosphorus-containing groups Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Trihelix N-Glycan biosynthesis methyltransferase activity methylation | details |
| TissueCFM000952 | endosome trans-Golgi network 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc fructokinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity ribokinase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity pectin biosynthetic process folic acid-containing compound biosynthetic process D-ribose metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I homogalacturonan biosynthesis sucrose degradation III (sucrose invertase) tetrahydrofolate biosynthesis II xylogalacturonan biosynthesis carbohydrate phosphorylation Folate biosynthesis Fructose and mannose metabolism secologanin and strictosidine biosynthesis | details |
| TissueCFM001025 | methylation | details |
| TissueCFM001051 | cellular process immune system process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: AUX/IAA calcium ion transmembrane transport Transcription_related, Transcription factor: WRKY calcium-transporting ATPase activity response to stimulus Lysosome Plant-pathogen interaction | details |
| TissueCFM001081 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: AUX/IAA galactosyltransferase activity Phenylpropanoid biosynthesis Plant hormone signal transduction | details |
| TissueCFM001098 | seed maturation regulation of shoot system development regulation of seed germination Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB transcription regulatory region DNA binding embryo development ending in seed dormancy | details |
| TissueCFM001100 | RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly Basal transcription factors positive regulation of transcription from RNA polymerase II promoter macromolecule metabolic process glucan endo-1,3-beta-D-glucosidase activity transcription regulatory region DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc transcription factor TFIID complex primary metabolic process chromatin binding polysaccharide binding | details |
| TissueCFM001432 | protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity mRNA surveillance pathway Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF signal transduction | details |
| TissueCFM001795 | inositol trisphosphate metabolic process regulation of proton transport inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity geranyltranstransferase activity inositol tetrakisphosphate 1-kinase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis inositol pyrophosphates biosynthesis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) dimethylallyltranstransferase activity isoprenoid biosynthetic process 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ABC transporters Inositol phosphate metabolism Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |