TissueCFM001098's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| seed maturation | 0.006070003 | GO:0010431 |
| regulation of shoot system development | 0.006070003 | GO:0048831 |
| regulation of seed germination | 0.006070003 | GO:0010029 |
| Transcription_related, Transcription factor: Trihelix | 0.014866131 | TF family |
| Transcription_related, Transcription factor: MYB | 0.024045297 | TF family |
| transcription regulatory region DNA binding | 0.034376359 | GO:0044212 |
| embryo development ending in seed dormancy | 0.042255248 | GO:0009793 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009033 | AT1G54060 (3.00E-09) | ASIL1|6B-interacting protein 1-like 1 |
| CRO_T011847 | AT1G20670 (2.00E-95) | DNA-binding bromodomain-containing protein |
| CRO_T022269 | AT1G79490 (0) | EMB2217|embryo defective 2217 |
| CRO_T024784 | AT3G06490 (1.00E-68) | AtMYB108|myb domain protein 108; BOS1|BOTRYTIS-SUSCEPTIBLE1 |
| CRO_T026116 | AT2G26680 (2.00E-118) | |
| CRO_T028468 | AT5G61020 (2.00E-100) | ECT3|evolutionarily conserved C-terminal region 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000578 | Lysosome sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding glucan endo-1,3-beta-D-glucosidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: bZIP lipid binding polysaccharide binding | details |
| TissueCFM000622 | L-histidine biosynthesis histidinol dehydrogenase activity regulation of shoot system development histidine biosynthetic process seed maturation regulation of seed germination Transcription_related, Transcription factor: Trihelix Biosynthesis of amino acids formation of glycosidic bonds, GlycosylTransferases: GTnc serine-type peptidase activity transcription regulatory region DNA binding pollen development | details |
| TissueCFM000681 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K 1-phosphatidylinositol 4-kinase activity MAP kinase kinase activity 3-phosphoinositide biosynthesis chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II D-myo-inositol (1,4,5)-trisphosphate biosynthesis MAPK signaling pathway - plant receptor signaling protein serine/threonine kinase activity Phenylpropanoid biosynthesis | details |
| TissueCFM000718 | transferase activity, transferring phosphorus-containing groups Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Trihelix N-Glycan biosynthesis methyltransferase activity methylation | details |
| TissueCFM000952 | endosome trans-Golgi network 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc fructokinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity ribokinase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity pectin biosynthetic process folic acid-containing compound biosynthetic process D-ribose metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I homogalacturonan biosynthesis sucrose degradation III (sucrose invertase) tetrahydrofolate biosynthesis II xylogalacturonan biosynthesis carbohydrate phosphorylation Folate biosynthesis Fructose and mannose metabolism secologanin and strictosidine biosynthesis | details |
| TissueCFM001025 | methylation | details |
| TissueCFM001100 | RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly Basal transcription factors positive regulation of transcription from RNA polymerase II promoter macromolecule metabolic process glucan endo-1,3-beta-D-glucosidase activity transcription regulatory region DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc transcription factor TFIID complex primary metabolic process chromatin binding polysaccharide binding | details |
| TissueCFM001103 | triacylglycerol degradation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phospholipid translocation lipid catabolic process phospholipid-translocating ATPase activity | details |
| TissueCFM001432 | protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity mRNA surveillance pathway Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF signal transduction | details |
| TissueCFM001503 | phytol metabolic process amino acid import 1-phosphatidylinositol binding 1-phosphatidylinositol 4-kinase activity clathrin binding diacylglycerol O-acyltransferase activity cellular protein modification process clathrin coat assembly chlorophyll a degradation II Endocytosis 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis diacylglycerol and triacylglycerol biosynthesis clathrin-coated vesicle amino acid transmembrane transporter activity plastoglobule phosphatidylinositol phosphorylation amino acid transmembrane transport response to salt stress protein autophosphorylation protein transport | details |
| TissueCFM001555 | ruffle membrane regulation of ruffle assembly amino acid import regulation of seed germination regulation of shoot system development seed maturation sequence-specific DNA binding Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: WRKY transcription regulatory region DNA binding phosphatidylinositol binding amino acid transmembrane transporter activity amino acid transmembrane transport | details |
| TissueCFM001724 | RNA lariat debranching enzyme activity cellular protein localization Transcription_related, Transcription factor: WRKY | details |
| TissueCFM001761 | L-lysine biosynthesis VI Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Transcription_related, Transcription factor: Trihelix regulation of shoot system development systemic acquired resistance, salicylic acid mediated signaling pathway seed maturation lysine biosynthetic process via diaminopimelate regulation of seed germination L,L-diaminopimelate aminotransferase activity response to cytokinin transcription regulatory region DNA binding embryo development ending in seed dormancy Biosynthesis of amino acids | details |
| TissueCFM001795 | inositol trisphosphate metabolic process regulation of proton transport inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity geranyltranstransferase activity inositol tetrakisphosphate 1-kinase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis inositol pyrophosphates biosynthesis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) dimethylallyltranstransferase activity isoprenoid biosynthetic process 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ABC transporters Inositol phosphate metabolism Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |