TissueCFM001107's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phototropism | 0.010119663 | GO:0009638 |
| chloroplast organization | 0.018173719 | GO:0009658 |
| signal transduction by protein phosphorylation | 0.018173719 | GO:0023014 |
| phosphorelay signal transduction system | 0.018173719 | GO:0000160 |
| signal transducer activity | 0.024253118 | GO:0004871 |
| phosphorelay sensor kinase activity | 0.024253118 | GO:0000155 |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.028165457 | kinase family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.028165457 | ubs family |
| Transcription_related, Transcription factor: MYB | 0.029388696 | TF family |
| signal transduction | 0.031803787 | GO:0007165 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004183 | AT2G30520 (0) | RPT2|ROOT PHOTOTROPISM 2 |
| CRO_T013567 | AT3G55730 (1.00E-71) | AtMYB109|myb domain protein 109 |
| CRO_T019319 | AT3G58480 (2.00E-71) | calmodulin-binding family protein |
| CRO_T029659 | AT1G13570 (2.00E-15) | F-box/RNI-like superfamily protein |
| CRO_T030481 | AT3G45780 (1.00E-75) | NPH1|NONPHOTOTROPIC HYPOCOTYL 1; PHOT1|phototropin 1; RPT1|ROOT PHOTOTROPISM 1 |
| CRO_T033293 | AT1G44000 (2.00E-63) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000093 | Ubiquitin_Proteasome_system, DUB: OTU Transcription_related, Transcription factor: GRAS | details |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000885 | magnesium ion transmembrane transporter activity signal transducer activity phototropism magnesium ion transport magnesium ion transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: BTB signal transduction | details |
| TissueCFM001216 | salicylate glucosides biosynthesis II regulation of pollen tube growth negative regulation of endopeptidase activity pollen tube guidance protein-disulfide reductase activity serine-type endopeptidase inhibitor activity quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis response to wounding pollen tube growth Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription regulator: LIM | details |
| TissueCFM001399 | L-serine biosynthesis L-serine biosynthetic process Phenylpropanoid biosynthesis phosphoglycerate dehydrogenase activity Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM001558 | quinate O-hydroxycinnamoyltransferase activity pheophorbide a oxygenase activity cell death fruit development chlorophyllide a oxygenase [overall] activity defense response to bacterium, incompatible interaction chlorophyll catabolic process Porphyrin and chlorophyll metabolism chlorogenic acid biosynthesis II chlorophyll a degradation II flower development chlorogenic acid biosynthesis I Transcription_related, Transcription factor: MYB chloroplast thylakoid 2 iron, 2 sulfur cluster binding Phenylpropanoid biosynthesis chloroplast envelope | details |
| TissueCFM001585 | Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis plastoglobule protein dephosphorylation Transcription_related, Transcription factor: MYB | details |
| TissueCFM001688 | ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) pheophorbide a oxygenase activity metal ion binding oxidation-reduction process cell death fruit development defense response to bacterium, incompatible interaction chlorophyll catabolic process chlorophyllide a oxygenase [overall] activity Porphyrin and chlorophyll metabolism flower development chlorophyll a degradation II Transcription_related, Transcription factor: MYB pinobanksin biosynthesis Flavonoid biosynthesis flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis 2 iron, 2 sulfur cluster binding chloroplast thylakoid chloroplast inner membrane | details |
| TissueCFM001797 | Indole alkaloid biosynthesis protein initiator methionine removal ajmaline and sarpagine biosynthesis Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase metalloaminopeptidase activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: MYB response to abscisic acid | details |
| TissueCFM001813 | salicylate glucosides biosynthesis II iron-sulfur cluster assembly quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis iron-sulfur cluster binding UDP-glucosyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |