TissueCFM001585's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Indole alkaloid biosynthesis | 0.002126245 | KEGG pathway |
| ajmaline and sarpagine biosynthesis | 0.005661614 | plantCyc |
| plastoglobule | 0.012215977 | GO:0010287 |
| protein dephosphorylation | 0.015505165 | GO:0006470 |
| Transcription_related, Transcription factor: MYB | 0.016030198 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013567 | AT3G55730 (1.00E-71) | AtMYB109|myb domain protein 109 |
| CRO_T020850 | AT5G60980 (7.00E-13) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| CRO_T028677 | AT4G31750 (6.00E-86) | WIN2|HOPW1-1-interacting 2 |
| CRO_T030883 | AT2G23610 (2.00E-54) | ATMES3|METHYL ESTERASE 3 |
| CRO_T031275 | AT1G26090 (8.00E-127) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T031774 | AT1G03370 (4.00E-11) | C2 calcium/lipid-binding and GRAM domain containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM001107 | phototropism chloroplast organization signal transduction by protein phosphorylation phosphorelay signal transduction system signal transducer activity phosphorelay sensor kinase activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Ubiquitin_Proteasome_system, E3 adaptor: BTB Transcription_related, Transcription factor: MYB signal transduction | details |
| TissueCFM001216 | salicylate glucosides biosynthesis II regulation of pollen tube growth negative regulation of endopeptidase activity pollen tube guidance protein-disulfide reductase activity serine-type endopeptidase inhibitor activity quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis response to wounding pollen tube growth Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription regulator: LIM | details |
| TissueCFM001270 | Drug metabolism - cytochrome P450 plastoglobule serine-type endopeptidase inhibitor activity negative regulation of endopeptidase activity response to wounding N,N-dimethylaniline monooxygenase activity ATPase activity NADP binding flavin adenine dinucleotide binding | details |
| TissueCFM001399 | L-serine biosynthesis L-serine biosynthetic process Phenylpropanoid biosynthesis phosphoglycerate dehydrogenase activity Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM001493 | Mitophagy - animal Transcription_related, Transcription factor: C2C2-YABBY plastoglobule Ubiquitin_Proteasome_system, E3 adaptor: BTB multicellular organism development | details |
| TissueCFM001558 | quinate O-hydroxycinnamoyltransferase activity pheophorbide a oxygenase activity cell death fruit development chlorophyllide a oxygenase [overall] activity defense response to bacterium, incompatible interaction chlorophyll catabolic process Porphyrin and chlorophyll metabolism chlorogenic acid biosynthesis II chlorophyll a degradation II flower development chlorogenic acid biosynthesis I Transcription_related, Transcription factor: MYB chloroplast thylakoid 2 iron, 2 sulfur cluster binding Phenylpropanoid biosynthesis chloroplast envelope | details |
| TissueCFM001688 | ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) pheophorbide a oxygenase activity metal ion binding oxidation-reduction process cell death fruit development defense response to bacterium, incompatible interaction chlorophyll catabolic process chlorophyllide a oxygenase [overall] activity Porphyrin and chlorophyll metabolism flower development chlorophyll a degradation II Transcription_related, Transcription factor: MYB pinobanksin biosynthesis Flavonoid biosynthesis flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis 2 iron, 2 sulfur cluster binding chloroplast thylakoid chloroplast inner membrane | details |
| TissueCFM001755 | 5-deoxystrigol biosynthesis positive regulation of proteasomal ubiquitin-dependent protein catabolic process glycerol ether metabolic process positive regulation of catalytic activity cellular response to oxidative stress sulfate assimilation protein catabolic process protein polyubiquitination enzyme activator activity ubiquitin conjugating enzyme binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor ATP-dependent peptidase activity plastoglobule | details |
| TissueCFM001791 | Transcription_related, Transcription factor: C2C2-YABBY specification of organ position abaxial cell fate specification inflorescence meristem growth Cytochrome_P450, Cytochrome P450: CYP98A specification of floral organ identity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity flavonoid 3'-monooxygenase activity fruit development Transcription_related, Transcription factor: NF-YA meristem structural organization Transcription_related, Transcription regulator: TRAF plastoglobule regulation of flower development chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II Mitophagy - animal Phenylpropanoid biosynthesis | details |
| TissueCFM001797 | Indole alkaloid biosynthesis protein initiator methionine removal ajmaline and sarpagine biosynthesis Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase metalloaminopeptidase activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: MYB response to abscisic acid | details |
| TissueCFM001813 | salicylate glucosides biosynthesis II iron-sulfur cluster assembly quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis iron-sulfur cluster binding UDP-glucosyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |