TissueCFM001399's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-serine biosynthesis | 0.004961899 | plantCyc |
| L-serine biosynthetic process | 0.009847074 | GO:0006564 |
| Phenylpropanoid biosynthesis | 0.023949131 | KEGG pathway |
| phosphoglycerate dehydrogenase activity | 0.02769096 | GO:0004617 |
| Transcription_related, Transcription factor: MYB | 0.031973497 | TF family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.031973497 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003329 | AT4G31390 (5.00E-173) | ABC1K1|ABC1-like kinase 1; ACDO1|ABC1-like kinase related to chlorophyll degradation and oxidative stress 1; PGR6|PROTON GRADIENT REGULATION 6 |
| CRO_T013567 | AT3G55730 (1.00E-71) | AtMYB109|myb domain protein 109 |
| CRO_T014411 | AT3G46730 (6.00E-52) | NB-ARC domain-containing disease resistance protein |
| CRO_T021177 | AT5G10250 (4.00E-83) | DOT3|DEFECTIVELY ORGANIZED TRIBUTARIES 3 |
| CRO_T023495 | AT3G57680 (1.00E-172) | Peptidase S41 family protein |
| CRO_T029392 | AT2G27385 (5.00E-28) | Pollen Ole e 1 allergen and extensin family protein |
| CRO_T030497 | AT3G19480 (0) | PGDH3|phosphoglycerate dehydrogenase 3 |
| CRO_T031512 | AT4G37990 (6.00E-125) | ATCAD8|CINNAMYL-ALCOHOL DEHYDROGENASE 8; CAD-B2|CINNAMYL-ALCOHOL DEHYDROGENASE B2; ELI3|ELICITOR-ACTIVATED GENE 3; ELI3-2|elicitor-activated gene 3-2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000615 | Carbon metabolism L-serine biosynthetic process L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolytic process Phenylpropanoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-tryptophan degradation VI (via tryptamine) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyridoxal phosphate binding adenosylhomocysteinase activity glucose-6-phosphate isomerase activity phosphoglycerate dehydrogenase activity aromatic-L-amino-acid decarboxylase activity phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphatidate cytidylyltransferase activity vomilenine glucosyltransferase activity tryptophan synthase activity raucaffricine beta-glucosidase activity S-adenosyl-L-methionine cycle II CDP-diacylglycerol biosynthesis II L-methionine degradation I (to L-homocysteine) strictosidine beta-glucosidase activity S-adenosylmethionine cycle starch metabolic process phosphatidylglycerol biosynthetic process glucosinolate catabolic process CDP-diacylglycerol biosynthetic process | details |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM001107 | phototropism chloroplast organization signal transduction by protein phosphorylation phosphorelay signal transduction system signal transducer activity phosphorelay sensor kinase activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Ubiquitin_Proteasome_system, E3 adaptor: BTB Transcription_related, Transcription factor: MYB signal transduction | details |
| TissueCFM001216 | salicylate glucosides biosynthesis II regulation of pollen tube growth negative regulation of endopeptidase activity pollen tube guidance protein-disulfide reductase activity serine-type endopeptidase inhibitor activity quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis response to wounding pollen tube growth Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription regulator: LIM | details |
| TissueCFM001321 | L-serine biosynthesis L-serine biosynthetic process phosphoglycerate dehydrogenase activity ajmaline and sarpagine biosynthesis Indole alkaloid biosynthesis Phenylpropanoid biosynthesis | details |
| TissueCFM001558 | quinate O-hydroxycinnamoyltransferase activity pheophorbide a oxygenase activity cell death fruit development chlorophyllide a oxygenase [overall] activity defense response to bacterium, incompatible interaction chlorophyll catabolic process Porphyrin and chlorophyll metabolism chlorogenic acid biosynthesis II chlorophyll a degradation II flower development chlorogenic acid biosynthesis I Transcription_related, Transcription factor: MYB chloroplast thylakoid 2 iron, 2 sulfur cluster binding Phenylpropanoid biosynthesis chloroplast envelope | details |
| TissueCFM001585 | Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis plastoglobule protein dephosphorylation Transcription_related, Transcription factor: MYB | details |
| TissueCFM001688 | ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) pheophorbide a oxygenase activity metal ion binding oxidation-reduction process cell death fruit development defense response to bacterium, incompatible interaction chlorophyll catabolic process chlorophyllide a oxygenase [overall] activity Porphyrin and chlorophyll metabolism flower development chlorophyll a degradation II Transcription_related, Transcription factor: MYB pinobanksin biosynthesis Flavonoid biosynthesis flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis 2 iron, 2 sulfur cluster binding chloroplast thylakoid chloroplast inner membrane | details |
| TissueCFM001740 | putrescine biosynthetic process cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) phosphopyruvate hydratase activity protein-arginine deiminase activity agmatine deiminase activity polynucleotide 5'-hydroxyl-kinase activity phosphopyruvate hydratase complex Ubiquitin_Proteasome_system, E3 adaptor: BTB putrescine biosynthesis II Arginine and proline metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process | details |
| TissueCFM001797 | Indole alkaloid biosynthesis protein initiator methionine removal ajmaline and sarpagine biosynthesis Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase metalloaminopeptidase activity Transcription_related, Transcription factor: WRKY Transcription_related, Transcription factor: MYB response to abscisic acid | details |
| TissueCFM001813 | salicylate glucosides biosynthesis II iron-sulfur cluster assembly quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis iron-sulfur cluster binding UDP-glucosyltransferase activity | details |
| TissueCFM001819 | Transcription_related, Transcription factor: MYB calcium-transporting ATPase activity calcium ion transmembrane transport protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |