TissueCFM001110's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| farnesol dehydrogenase activity | 0.005782675 | GO:0047886 |
| mRNA (guanine-N7-)-methyltransferase activity | 0.005782675 | GO:0004482 |
| tau-protein kinase activity | 0.006424245 | GO:0050321 |
| 7-methylguanosine mRNA capping | 0.008044024 | GO:0006370 |
| farnesol metabolic process | 0.008044024 | GO:0016487 |
| RNA (guanine-N7)-methylation | 0.00857839 | GO:0036265 |
| mRNA cap binding complex | 0.009654255 | GO:0005845 |
| negative regulation of abscisic acid-activated signaling pathway | 0.011254147 | GO:0009788 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.017487175 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.017487175 | cazy family |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.017487175 | kinase family |
| mRNA surveillance pathway | 0.022207137 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.022207137 | KEGG pathway |
| coenzyme binding | 0.03748754 | GO:0050662 |
| polysaccharide binding | 0.046831311 | GO:0030247 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002671 | AT1G14870 (3.00E-07) | PCR2|PLANT CADMIUM RESISTANCE 2 |
| CRO_T002979 | AT4G22290 (1.00E-49) | Ubiquitin-specific protease family C19-related protein |
| CRO_T009097 | AT2G16230 (2.00E-161) | O-Glycosyl hydrolases family 17 protein |
| CRO_T019395 | AT3G20650 (1.00E-172) | mRNA capping enzyme family protein |
| CRO_T019769 | AT1G09480 (5.00E-17) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T021132 | AT1G78530 (2.00E-47) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000537 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity regulation of nucleobase-containing compound metabolic process homogentisate catabolic process tyrosine catabolic process pectin catabolic process positive regulation of chromatin organization trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis L-cysteine biosynthesis I polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) homogentisate 1,2-dioxygenase activity Z-farnesyl diphosphate synthase activity Atg8 ligase activity D-myo-inositol (1,4,5)-trisphosphate degradation farnesyl diphosphate biosynthetic process regulation of macromolecule metabolic process L-phenylalanine catabolic process mitotic chromosome condensation mitophagy nucleophagy Pentose and glucuronate interconversions Cell cycle - yeast RIG-I-like receptor signaling pathway Tyrosine metabolism autophagosome assembly condensed chromosome cytoplasmic ubiquitin ligase complex | details |
| TissueCFM000714 | nucleoside metabolic process dTTP biosynthetic process dUDP biosynthetic process dTDP biosynthetic process thymidylate kinase activity catalytic activity uridylate kinase activity Pyrimidine metabolism pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I | details |
| TissueCFM000768 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polysaccharide binding anchored component of plasma membrane hydrolase activity, hydrolyzing O-glycosyl compounds Proteasome proteasome-activating ATPase activity TBP-class protein binding positive regulation of proteasomal protein catabolic process chiasma assembly nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cytosolic proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process chromosome | details |
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001239 | phosphate acquisition Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III tau-protein kinase activity Transcription_related, Transcription factor: FAR1 isomerase activity acid phosphatase activity | details |
| TissueCFM001599 | Terpenoid backbone biosynthesis mevalonate pathway I calcium:proton antiporter activity farnesol dehydrogenase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process transmembrane transport farnesol metabolic process integral component of membrane Transcription_related, Transcription factor: MYB-related ABC transporters negative regulation of abscisic acid-activated signaling pathway isoprenoid biosynthetic process calcium ion transmembrane transport plasma membrane NADP binding coenzyme binding oxidation-reduction process | details |
| TissueCFM001717 | farnesol dehydrogenase activity farnesol metabolic process transmembrane transport ABC transporters Terpenoid backbone biosynthesis negative regulation of abscisic acid-activated signaling pathway Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP cellular protein metabolic process cysteine-type peptidase activity coenzyme binding | details |
Expression profiles
 Show details about module gene expression profiling |