TissueCFM001239's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphate acquisition | 0.005984652 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.012391922 | kinase family |
| tau-protein kinase activity | 0.015200306 | GO:0050321 |
| Transcription_related, Transcription factor: FAR1 | 0.024040353 | TF family |
| isomerase activity | 0.036380614 | GO:0016853 |
| acid phosphatase activity | 0.036380614 | GO:0003993 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001151 | - | - |
| CRO_T002503 | AT1G17620 (1.00E-32) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T004591 | AT5G35400 (1.00E-32) | Pseudouridine synthase family protein |
| CRO_T005903 | AT4G25150 (8.00E-25) | HAD superfamily, subfamily IIIB acid phosphatase |
| CRO_T009025 | AT3G14160 (3.00E-84) | 2-oxoglutarate-dependent dioxygenase family protein |
| CRO_T016699 | - | - |
| CRO_T021132 | AT1G78530 (2.00E-47) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM000364 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: Tify volatile benzenoid biosynthesis I (ester formation) regulation of response to stimulus tryptophan biosynthetic process benzoate biosynthesis I (CoA-dependent, β-oxidative) tryptophan synthase activity DNA repair regulation of cellular process Biosynthesis of amino acids Plant hormone signal transduction | details |
| TissueCFM000537 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity regulation of nucleobase-containing compound metabolic process homogentisate catabolic process tyrosine catabolic process pectin catabolic process positive regulation of chromatin organization trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis L-cysteine biosynthesis I polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) homogentisate 1,2-dioxygenase activity Z-farnesyl diphosphate synthase activity Atg8 ligase activity D-myo-inositol (1,4,5)-trisphosphate degradation farnesyl diphosphate biosynthetic process regulation of macromolecule metabolic process L-phenylalanine catabolic process mitotic chromosome condensation mitophagy nucleophagy Pentose and glucuronate interconversions Cell cycle - yeast RIG-I-like receptor signaling pathway Tyrosine metabolism autophagosome assembly condensed chromosome cytoplasmic ubiquitin ligase complex | details |
| TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
| TissueCFM000936 | salicylate glucosides biosynthesis II Porphyrin and chlorophyll metabolism quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis protein histidine kinase activity Transcription_related, Transcription factor: ERF | details |
| TissueCFM001110 | farnesol dehydrogenase activity mRNA (guanine-N7-)-methyltransferase activity tau-protein kinase activity 7-methylguanosine mRNA capping farnesol metabolic process RNA (guanine-N7)-methylation mRNA cap binding complex negative regulation of abscisic acid-activated signaling pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III mRNA surveillance pathway Terpenoid backbone biosynthesis coenzyme binding polysaccharide binding | details |
| TissueCFM001158 | Proteasome chiasma assembly positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex chromosome proteasome-activating ATPase activity TBP-class protein binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane | details |
| TissueCFM001200 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase biotin biosynthesis from 8-amino-7-oxononanoate I protein retention in ER lumen ER retention sequence binding DNA metabolic process ATP-dependent helicase activity | details |
| TissueCFM001238 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 hydroxymethylglutaryl-CoA reductase (NADPH) activity metal ion transmembrane transporter activity peroxisomal membrane Pyruvate metabolism mevalonate pathway I Terpenoid backbone biosynthesis phosphate acquisition sterol biosynthetic process coenzyme A metabolic process homogalacturonan degradation isoprenoid biosynthetic process acid phosphatase activity NADP binding metal ion transport | details |
Expression profiles
 Show details about module gene expression profiling |