TissueCFM001113's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phytochromobilin biosynthesis | 0.002275481 | plantCyc |
| Transcription_related, Transcription factor: G2-like | 0.005572906 | TF family |
| proline-tRNA ligase activity | 0.006871064 | GO:0004827 |
| MAP kinase tyrosine/serine/threonine phosphatase activity | 0.006871064 | GO:0017017 |
| phytochromobilin:ferredoxin oxidoreductase activity | 0.006871064 | GO:0050619 |
| regulation of photosynthesis | 0.007807759 | GO:0010109 |
| prolyl-tRNA aminoacylation | 0.007807759 | GO:0006433 |
| inactivation of MAPK activity | 0.007807759 | GO:0000188 |
| phytochromobilin biosynthetic process | 0.007807759 | GO:0010024 |
| response to UV-C | 0.007807759 | GO:0010225 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.011926168 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.012480797 | plantCyc |
| chloroplast-nucleus signaling pathway | 0.01300947 | GO:0010019 |
| plant ovule development | 0.016722013 | GO:0048481 |
| response to UV-B | 0.02275043 | GO:0010224 |
| seed development | 0.02310745 | GO:0048316 |
| embryo sac development | 0.02362424 | GO:0009553 |
| peptidyl-tyrosine dephosphorylation | 0.02362424 | GO:0035335 |
| protein tyrosine phosphatase activity | 0.024010376 | GO:0004725 |
| histone binding | 0.024010376 | GO:0042393 |
| cobalt ion binding | 0.024010376 | GO:0050897 |
| Aminoacyl-tRNA biosynthesis | 0.02413877 | KEGG pathway |
| Fatty acid metabolism | 0.02413877 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.02413877 | KEGG pathway |
| single-organism process | 0.042157266 | GO:0044699 |
| response to salt stress | 0.044877358 | GO:0009651 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003983 | AT3G47300 (2.00E-57) | SELT|SELT-like protein precursor |
| CRO_T004167 | AT5G24690 (2.00E-12) | Protein of unknown function (DUF3411) |
| CRO_T011943 | AT3G09150 (5.00E-92) | ATHY2|ARABIDOPSIS ELONGATED HYPOCOTYL 2; GUN3|GENOMES UNCOUPLED 3; HY2|ELONGATED HYPOCOTYL 2 |
| CRO_T018374 | AT3G55270 (0) | ATMKP1|ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1; MKP1|mitogen-activated protein kinase phosphatase 1 |
| CRO_T020123 | AT1G74960 (0) | ATKAS2|ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2; FAB1|fatty acid biosynthesis 1; KAS2|BETA-KETOACYL-ACP SYNTHETASE 2 |
| CRO_T027894 | AT5G05610 (7.00E-88) | AL1|alfin-like 1 |
| CRO_T033626 | AT5G52520 (5.00E-138) | OVA6|OVULE ABORTION 6; PRORS1|PROLYL-TRNA SYNTHETASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000688 | Transcription_related, Transcription factor: MIKC proline-tRNA ligase activity regulation of photosynthesis prolyl-tRNA aminoacylation cytokinesis plant ovule development seed development microtubule cytoskeleton organization embryo sac development Aminoacyl-tRNA biosynthesis RNA degradation microtubule binding | details |
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001053 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, DUB: USP response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity protein deubiquitination response to osmotic stress oligopeptide transport peptidyl-tyrosine dephosphorylation response to UV-B thiol-dependent ubiquitinyl hydrolase activity Spliceosome protein tyrosine phosphatase activity response to salt stress nuclear chromatin cell Golgi membrane cell redox homeostasis | details |
| TissueCFM001400 | integral component of membrane response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity phragmoplast spindle nuclear chromatin formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) oligopeptide transport response to UV-B peptidyl-tyrosine dephosphorylation plasma membrane cellulose biosynthetic process response to salt stress | details |
| TissueCFM001641 | maltose alpha-glucosidase activity MAP kinase tyrosine/serine/threonine phosphatase activity alpha-1,4-glucosidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc response to UV-C inactivation of MAPK activity maltose metabolic process Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein tyrosine phosphatase activity oligopeptide transport response to UV-B protein deubiquitination peptidyl-tyrosine dephosphorylation unidimensional cell growth N-Glycan biosynthesis defense response to bacterium response to salt stress cellulose biosynthetic process Spliceosome | details |
| TissueCFM001658 | response to UV-C inactivation of MAPK activity regulation of photosynthesis prolyl-tRNA aminoacylation phosphatidate phosphatase activity proline-tRNA ligase activity guanyl-nucleotide exchange factor activity microtubule minus-end binding S-methyl-5-thioribose-1-phosphate isomerase activity MAP kinase tyrosine/serine/threonine phosphatase activity phospholipid dephosphorylation eukaryotic translation initiation factor 2B complex spindle microtubule HAUS complex diacylglycerol and triacylglycerol biosynthesis phosphatidate metabolism, as a signaling molecule phospholipid metabolic process plant ovule development spindle assembly L-methionine biosynthetic process from methylthioadenosine response to UV-B seed development peptidyl-tyrosine dephosphorylation embryo sac development protein tyrosine phosphatase activity regulation of translational initiation | details |
| TissueCFM001783 | Basal transcription factors DNA-templated transcription, initiation transcription, DNA-templated Transcription_related, Transcription factor: G2-like ribonucleoside binding DNA binding histone binding translational initiation DNA-directed RNA polymerase activity translation initiation factor activity | details |
| TissueCFM001810 | Peroxisome protein import into peroxisome matrix fatty acid beta-oxidation queuosine biosynthetic process peroxisome organization Transcription_related, Transcription factor: G2-like Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription regulator: Jumonji queuine tRNA-ribosyltransferase activity histone binding serine-type peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |