TissueCFM001783's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Basal transcription factors | 0.007249122 | KEGG pathway |
| DNA-templated transcription, initiation | 0.009596925 | GO:0006352 |
| transcription, DNA-templated | 0.009596925 | GO:0006351 |
| Transcription_related, Transcription factor: G2-like | 0.014336257 | TF family |
| ribonucleoside binding | 0.019977123 | GO:0032549 |
| DNA binding | 0.019977123 | GO:0003677 |
| histone binding | 0.019977123 | GO:0042393 |
| translational initiation | 0.025029281 | GO:0006413 |
| DNA-directed RNA polymerase activity | 0.029878328 | GO:0003899 |
| translation initiation factor activity | 0.040434906 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003983 | AT3G47300 (2.00E-57) | SELT|SELT-like protein precursor |
| CRO_T005715 | AT3G18090 (3.00E-113) | NRPD2B|nuclear RNA polymerase D2B |
| CRO_T006345 | AT2G42920 (4.00E-19) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T016187 | AT4G31720 (4.00E-49) | STG1|SALT TOLERANCE DURING GERMINATION 1; TAF10|TBP-ASSOCIATED FACTOR 10; TAFII15|TBP-associated factor II 15 |
| CRO_T027894 | AT5G05610 (7.00E-88) | AL1|alfin-like 1 |
| CRO_T031646 | AT1G01230 (1.00E-75) | ORMDL family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000688 | Transcription_related, Transcription factor: MIKC proline-tRNA ligase activity regulation of photosynthesis prolyl-tRNA aminoacylation cytokinesis plant ovule development seed development microtubule cytoskeleton organization embryo sac development Aminoacyl-tRNA biosynthesis RNA degradation microtubule binding | details |
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001113 | phytochromobilin biosynthesis Transcription_related, Transcription factor: G2-like proline-tRNA ligase activity MAP kinase tyrosine/serine/threonine phosphatase activity phytochromobilin:ferredoxin oxidoreductase activity regulation of photosynthesis prolyl-tRNA aminoacylation inactivation of MAPK activity phytochromobilin biosynthetic process response to UV-C octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) chloroplast-nucleus signaling pathway plant ovule development response to UV-B seed development embryo sac development peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity histone binding cobalt ion binding Aminoacyl-tRNA biosynthesis Fatty acid metabolism Porphyrin and chlorophyll metabolism single-organism process response to salt stress | details |
| TissueCFM001187 | formation of glycosidic bonds, GlycosylTransferases: GTnc NADP+ binding steroid dehydrogenase activity alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts Basal transcription factors cation transmembrane transporter activity response to absence of light response to toxic substance response to red light response to far red light calcium-transporting ATPase activity cation transmembrane transport response to cold DNA-templated transcription, initiation calcium ion transmembrane transport nuclear body response to water deprivation response to salt stress translational initiation | details |
| TissueCFM001194 | ribonucleoside binding DNA-directed RNA polymerase activity D-cysteine desulfhydrase activity 1-aminocyclopropane-1-carboxylate deaminase activity DNA binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc SNARE interactions in vesicular transport D-cysteine catabolic process ethylene biosynthetic process membrane fusion transcription, DNA-templated cobalt ion binding cellular protein metabolic process | details |
| TissueCFM001282 | Basal transcription factors Ras signaling pathway early endosome membrane DNA-templated transcription, initiation exocytosis protein transport vesicle fusion translational initiation small GTPase mediated signal transduction | details |
| TissueCFM001750 | alcohol dehydrogenase (NADP+) activity NADP+ binding steroid dehydrogenase activity clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit aspartate kinase activity L-homoserine biosynthesis nuclear body L-lysine biosynthesis VI detoxification of reactive carbonyls in chloroplasts structural molecule activity response to toxic substance response to absence of light response to far red light response to red light amino acid binding DNA-templated transcription, initiation response to cold embryo sac development 2-Oxocarboxylic acid metabolism Basal transcription factors protein homodimerization activity cellular amino acid biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Endocytosis Ribosome biogenesis in eukaryotes translation initiation factor activity response to salt stress rRNA processing response to water deprivation translational initiation | details |
| TissueCFM001810 | Peroxisome protein import into peroxisome matrix fatty acid beta-oxidation queuosine biosynthetic process peroxisome organization Transcription_related, Transcription factor: G2-like Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription regulator: Jumonji queuine tRNA-ribosyltransferase activity histone binding serine-type peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |