TissueCFM000437's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase | 0.009097083 | kinase family |
| Ubiquitin_Proteasome_system, DUB: USP | 0.01532549 | ubs family |
| receptor signaling protein serine/threonine kinase activity | 0.015911428 | GO:0004702 |
| single-organism process | 0.024123584 | GO:0044699 |
| Transcription_related, Transcription factor: HB | 0.028260062 | TF family |
| chromosome | 0.030650981 | GO:0005694 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011669 | - | - |
| CRO_T014171 | - | - |
| CRO_T017288 | AT3G23270 (5.00E-22) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T017660 | AT3G09670 (6.00E-56) | Tudor/PWWP/MBT superfamily protein |
| CRO_T026177 | AT3G49600 (3.00E-18) | UBP26|ubiquitin-specific protease 26 |
| CRO_T026820 | - | - |
| CRO_T029825 | AT3G13530 (2.00E-47) | MAP3KE1|MAP3K EPSILON PROTEIN KINASE; MAPKKK7|mitogen-activated protein kinase kinase kinase 7 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000438 | eukaryotic translation initiation factor 2 complex multi-eIF complex mitochondrial translation aminoacyl-tRNA hydrolase activity eukaryotic translation initiation factor 2B complex ribosome binding Transcription_related, Transcription factor: HB translational initiation eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport | details |
| TissueCFM000924 | Ubiquitin_Proteasome_system, E3: HECT lateral root formation trichome branching inflorescence morphogenesis response to fungus chromosome organization DNA endoreduplication photomorphogenesis regulation of translational initiation formation of translation preinitiation complex auxin polar transport unidimensional cell growth response to auxin protein ubiquitination involved in ubiquitin-dependent protein catabolic process Cell cycle Viral carcinogenesis chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex | details |
| TissueCFM000995 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase trans-Golgi network late endosome to vacuole transport secretion by cell developmental growth early endosome RNA degradation negative regulation of abscisic acid-activated signaling pathway protein phosphorylation | details |
| TissueCFM000997 | eukaryotic translation initiation factor 2 complex multi-eIF complex mitochondrial translation aminoacyl-tRNA hydrolase activity eukaryotic translation initiation factor 2B complex ribosome binding translational initiation eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001165 | ErbB signaling pathway positive regulation of rRNA processing negative regulation of autophagy positive regulation of cell growth positive regulation of embryonic development rRNA transcription regulatory region DNA binding macromolecular complex binding protein self-association positive regulation of transcription, DNA-templated identical protein binding peptidase activity | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001371 | actin binding N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex phosphatidylinositol-mediated signaling cytoskeleton organization Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, DUB: USP 1-phosphatidylinositol 4-kinase activity DNA topoisomerase type I activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis motor activity myosin complex cytosolic ribosome spliceosomal complex phosphatidylinositol phosphorylation single-organism process mRNA splicing, via spliceosome Inositol phosphate metabolism | details |
Expression profiles
 Show details about module gene expression profiling |