TissueCFM001179's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| D-myo-inositol-5-phosphate metabolism | 0.001860602 | plantCyc |
| mRNA catabolic process | 0.007082508 | GO:0006402 |
| rRNA catabolic process | 0.007082508 | GO:0016075 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.011009423 | GO:0090503 |
| nuclear exosome (RNase complex) | 0.011194097 | GO:0000176 |
| cytoplasmic exosome (RNase complex) | 0.011194097 | GO:0000177 |
| peptidyl-tyrosine dephosphorylation | 0.011201053 | GO:0035335 |
| Transcription_related, Transcription factor: C3H | 0.015756345 | TF family |
| Ubiquitin_Proteasome_system, DUB: USP | 0.015756345 | ubs family |
| rRNA processing | 0.019298882 | GO:0006364 |
| Inositol phosphate metabolism | 0.022815599 | KEGG pathway |
| RNA degradation | 0.022815599 | KEGG pathway |
| protein tyrosine phosphatase activity | 0.025288962 | GO:0004725 |
| 3'-5'-exoribonuclease activity | 0.025288962 | GO:0000175 |
| endonuclease activity | 0.025288962 | GO:0004519 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.03935648 | GO:0016747 |
| anchored component of plasma membrane | 0.045085935 | GO:0046658 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000277 | AT3G10550 (5.00E-92) | AtMTM1|myotubularin 1 |
| CRO_T009094 | AT3G49600 (2.00E-22) | UBP26|ubiquitin-specific protease 26 |
| CRO_T012130 | AT2G17510 (0) | EMB2763|EMBRYO DEFECTIVE 2763 |
| CRO_T013509 | AT2G18090 (6.00E-17) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein |
| CRO_T018542 | AT2G32300 (3.00E-21) | UCC1|uclacyanin 1 |
| CRO_T024864 | AT1G24300 (8.00E-18) | GYF domain-containing protein |
| CRO_T027577 | AT5G55350 (1.00E-42) | MBOAT (membrane bound O-acyl transferase) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000970 | chloroplast ascorbate glutathione cycle L-ascorbate degradation V defense response signaling pathway, resistance gene-dependent defense response signaling pathway, resistance gene-independent L-ascorbate peroxidase activity Ascorbate and aldarate metabolism Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001667 | response to stimulus protein tyrosine phosphatase activity electron carrier activity | details |
| TissueCFM001723 | nucleus regulation of transcription, DNA-templated organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic actin filament organization trichome morphogenesis multidimensional cell growth transcription, DNA-templated retrograde vesicle-mediated transport, Golgi to ER protein-cysteine S-palmitoyltransferase activity threonine-type endopeptidase activity DNA-dependent ATPase activity Proteasome Protein export Regulation of actin cytoskeleton SNARE interactions in vesicular transport proteasome core complex Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, DUB: USP ER to Golgi vesicle-mediated transport positive regulation of transcription, DNA-templated chromatin binding | details |
| TissueCFM001752 | Transcription_related, Transcription factor: C3H proteasome complex response to stimulus Proteasome RNA binding Transcription_related, Transcription factor: FAR1 metal ion binding | details |
| TissueCFM001784 | Ubiquitin_Proteasome_system, DUB: USP glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glycolytic process glucose metabolic process organic substance metabolic process cellular metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) | details |
| TissueCFM001794 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) preribosome, small subunit precursor Ino80 complex Ubiquitin_Proteasome_system, DUB: USP transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex U3 snoRNA binding Purine metabolism ribonucleoside binding RNA polymerase III activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |